棉花中钙调蛋白结合蛋白60基因家族的全基因组鉴定及其在生长发育和非生物胁迫响应中的功能

Genome-Wide Identification of Calmodulin-Binding Protein 60 Gene Family and the Function of in Cotton Growth and Development and Abiotic Stress Response.

作者信息

Luo Kun, Sha Long, Li Tengyu, Wang Chenlei, Zhao Xuan, Pan Jingwen, Zhu Shouhong, Li Yan, Chen Wei, Yao Jinbo, Rong Junkang, Zhang Yongshan

机构信息

State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang 455000, China.

The Key Laboratory for Quality Improvement of Agricultural Products of Zhejiang Province, Zhejiang Agricultural and Forestry University, Hangzhou 311300, China.

出版信息

Int J Mol Sci. 2024 Apr 15;25(8):4349. doi: 10.3390/ijms25084349.

Abstract

The calmodulin-binding protein 60 () family is a gene family unique to plants, and its members play a crucial role in plant defense responses to pathogens and growth and development. Considering that cotton is the primary source of natural cotton textile fiber, the functional study of its gene family members is critical. In this research, we successfully identified 162 members from the genomes of 21 species. Of these, 72 members were found in four cotton species, divided into four clades. To understand the function of in cotton in depth, we conducted a detailed analysis of its sequence, structure, cis-acting elements, and expression patterns. Research results show that is located in the nucleus and plays a crucial role in cotton growth and development and response to salt and drought stress. After using VIGS (virus-induced gene silencing) technology to conduct gene silencing experiments, we found that the plants silenced by showed dwarf plants and shortened stem nodes, and the expression of related immune genes also changed. In further abiotic stress treatment experiments, we found that GhCBP60B-silenced plants were more sensitive to drought and salt stress, and their POD (peroxidase) activity was also significantly reduced. These results imply the vital role of in cotton, especially in regulating plant responses to drought and salt stress. This study systematically analyzed gene family members through bioinformatics methods and explored in depth the biological function of in cotton. These research results lay a solid foundation for the future use of the gene to improve cotton plant type and its drought and salt resistance.

摘要

钙调蛋白结合蛋白60()家族是植物特有的基因家族,其成员在植物对病原体的防御反应以及生长发育过程中发挥着关键作用。鉴于棉花是天然棉纺织纤维的主要来源,对其基因家族成员进行功能研究至关重要。在本研究中,我们成功地从21个物种的基因组中鉴定出162个成员。其中,在四个棉花物种中发现了72个成员,分为四个进化枝。为深入了解在棉花中的功能,我们对其序列、结构、顺式作用元件和表达模式进行了详细分析。研究结果表明,位于细胞核中,在棉花生长发育以及对盐和干旱胁迫的响应中发挥着关键作用。在使用病毒诱导基因沉默(VIGS)技术进行基因沉默实验后,我们发现被沉默的植株表现出植株矮小和茎节缩短的现象,相关免疫基因的表达也发生了变化。在进一步的非生物胁迫处理实验中,我们发现沉默GhCBP60B的植株对干旱和盐胁迫更为敏感,其过氧化物酶(POD)活性也显著降低。这些结果表明在棉花中起着至关重要的作用,尤其是在调节植物对干旱和盐胁迫的响应方面。本研究通过生物信息学方法系统地分析了基因家族成员,并深入探究了在棉花中的生物学功能。这些研究结果为未来利用基因改善棉花株型及其抗旱和抗盐性奠定了坚实的基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2829/11049924/ce83a11eb0d9/ijms-25-04349-g001.jpg

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