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开发一种用于快速检测亚种的实时重组酶辅助扩增方法。

Development of a Real-Time Recombinase-Aided Amplification Method for the Rapid Detection of subsp. .

作者信息

Zu Haoyu, Sun Rongkuan, Li Jiaxin, Guo Xing, Wang Min, Guo Wei, Wang Xiaojun

机构信息

State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China.

College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China.

出版信息

Microorganisms. 2024 Apr 11;12(4):777. doi: 10.3390/microorganisms12040777.

Abstract

subspecies () is the causative pathogen of strangles in horses, donkeys, and other equine animals. Strangles has spread globally and causes significant losses to the horse industry. In response to the urgent need for effective disease control, this study introduces a novel nucleic acid diagnostic method known as a real-time recombinase-assisted amplification (RAA) assay, developed based on the gene, for the rapid detection of nucleic acid. The real-time RAA method employs specifically designed probes and primers targeting the gene, enhancing the overall specificity and sensitivity of the detection. After efficiency optimization, this real-time RAA method can detect 10 or more copies of nucleic acid within 20 min. The method demonstrates high specificity for and does not cross-react with other clinically relevant pathogens. Real-time RAA diagnostic performance was evaluated using 98 nasal swab samples collected from horses and compared with the real-time PCR detection method. Results revealed that 64 and 65 samples tested positive for using real-time RAA and real-time PCR, respectively. The overall agreement between the two assays was 96.94% (95/98), with a kappa value of 0.931 ( < 0.001). Further linear regression analysis indicated a significant correlation in the detection results between the two methods (R = 0.9012, < 0.0001), suggesting that the real-time RAA assay exhibits a detection performance comparable to that of real-time PCR. In conclusion, the real-time RAA assay developed here serves as a highly specific and reliable diagnostic tool for the detection of in equine samples, offering a potential alternative to real-time PCR methods. In conclusion, the real-time RAA nucleic acid diagnostic method, based on the gene, offers rapid and accurate diagnosis of , with the added advantage of minimal equipment requirements, thus contributing to the efficient detection of strangles in horses.

摘要

亚种()是马、驴和其他马属动物患腺疫的致病病原体。腺疫已在全球范围内传播,给养马业造成重大损失。为满足有效疾病控制的迫切需求,本研究引入了一种新型核酸诊断方法,即基于基因开发的实时重组酶介导扩增(RAA)检测法,用于快速检测核酸。实时RAA方法采用针对基因专门设计的探针和引物,提高了检测的整体特异性和灵敏度。经过效率优化后,这种实时RAA方法可在20分钟内检测到10个或更多核酸拷贝。该方法对具有高度特异性,与其他临床相关病原体无交叉反应。使用从马采集的98份鼻拭子样本评估实时RAA的诊断性能,并与实时PCR检测方法进行比较。结果显示,分别使用实时RAA和实时PCR检测时,有64份和65份样本检测呈阳性。两种检测方法的总体一致性为96.94%(95/98),kappa值为0.931(<0.001)。进一步的线性回归分析表明,两种方法的检测结果具有显著相关性(R = 0.9012,<0.0001),这表明实时RAA检测法的检测性能与实时PCR相当。总之,这里开发的实时RAA检测法是一种用于检测马属样本中高度特异性和可靠的诊断工具,为实时PCR方法提供了潜在的替代方案。总之,基于基因的实时RAA核酸诊断方法能够快速、准确地诊断,且具有设备要求极低的额外优势,从而有助于高效检测马的腺疫。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04c/11052427/1a16b95518b9/microorganisms-12-00777-g001.jpg

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