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对乙酰氨基酚的生物降解:以微宇宙为中心的基因组-蛋白质组-代谢组学证据。

Biodegradation of acetaminophen: Microcosm centric genomic-proteomic-metabolomics evidences.

机构信息

Department of Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India.

Department of Biotechnology Engineering, Institute of Engineering and Technology, Bundelkhand University, Jhansi 284128, India.

出版信息

Bioresour Technol. 2024 Jun;401:130732. doi: 10.1016/j.biortech.2024.130732. Epub 2024 Apr 25.

Abstract

Acetaminophen (APAP) is a frequently used, over-the-counter analgesic and antipyretic medication. Considering increase in global consumption, its ubiquity in environment with potential toxic impacts has become a cause of great concern. Hence, bioremediation of this emerging contaminant is of paramount significance. The present study incorporates a microcosm centric omics approach to gain in-depth insights into APAP degradation by Paracoccus sp. APAP_BH8. It can metabolize APAP (300 mg kg) within 16 days in soil microcosms. Genome analysis revealed potential genes capable of mediating degradation includes M20 aminoacylase family protein, guanidine deaminase, 4-hydroxybenzoate 3-monooxygenase, and 4-hydroxyphenylpyruvate dioxygenase. Whole proteome analysis showed differential expression of enzymes and bioinformatics provided evidence for stable binding of intermediates at the active site of considered enzymes. Metabolites identified were 4-aminophenol, hydroquinone, and 3-hydroxy-cis, cis-muconate. Therefore, Paracoccus sp. APAP_BH8 with versatile enzymatic and genetic attributes can be a promising candidate for formulating improved in situ APAP bioremediation strategies.

摘要

对乙酰氨基酚(APAP)是一种常用的非处方止痛药和解热药。考虑到全球用量的增加,它在环境中的普遍存在及其潜在的毒性影响已成为人们关注的主要原因。因此,这种新兴污染物的生物修复具有至关重要的意义。本研究采用以微宇宙为中心的组学方法,深入了解 Paracoccus sp. APAP_BH8 对 APAP 的降解作用。该菌可以在土壤微宇宙中 16 天内将 300mg/kg 的 APAP 代谢掉。基因组分析显示,可能介导降解的潜在基因包括 M20 氨酰酶家族蛋白、胍基脱氨酶、4-羟基苯甲酸 3-单加氧酶和 4-羟基苯丙酮酸双加氧酶。全蛋白质组分析显示,酶的表达存在差异,生物信息学提供了证据表明中间产物在考虑的酶的活性部位稳定结合。鉴定出的代谢产物为 4-氨基酚、对苯二酚和 3-羟基顺式,顺式-粘康酸。因此,具有多功能酶和遗传特性的 Paracoccus sp. APAP_BH8 可能是制定改进的原位 APAP 生物修复策略的有前途的候选物。

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