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碳水化合物结合模块:在碳水化合物活性酶的特定底物结合和性能演化中,小巧而强大的辅助因子。

Carbohydrate binding modules: Compact yet potent accessories in the specific substrate binding and performance evolution of carbohydrate-active enzymes.

机构信息

State Key Laboratory of Food Science and Resources, Jiangnan University, Wuxi 214122, China; School of Food Science and Technology, Jiangnan University, Wuxi 214122, China; Yixing Institute of Food and Biotechnology Co., Ltd, Yixing 214200, China.

State Key Laboratory of Food Science and Resources, Jiangnan University, Wuxi 214122, China; School of Food Science and Technology, Jiangnan University, Wuxi 214122, China.

出版信息

Biotechnol Adv. 2024 Jul-Aug;73:108365. doi: 10.1016/j.biotechadv.2024.108365. Epub 2024 Apr 26.

Abstract

Carbohydrate binding modules (CBMs) are independent non-catalytic domains widely found in carbohydrate-active enzymes (CAZymes), and they play an essential role in the substrate binding process of CAZymes by guiding the appended catalytic modules to the target substrates. Owing to their precise recognition and selective affinity for different substrates, CBMs have received increasing research attention over the past few decades. To date, CBMs from different origins have formed a large number of families that show a variety of substrate types, structural features, and ligand recognition mechanisms. Moreover, through the modification of specific sites of CBMs and the fusion of heterologous CBMs with catalytic domains, improved enzymatic properties and catalytic patterns of numerous CAZymes have been achieved. Based on cutting-edge technologies in computational biology, gene editing, and protein engineering, CBMs as auxiliary components have become portable and efficient tools for the evolution and application of CAZymes. With the aim to provide a theoretical reference for the functional research, rational design, and targeted utilization of novel CBMs in the future, we systematically reviewed the function-related characteristics and potentials of CAZyme-derived CBMs in this review, including substrate recognition and binding mechanisms, non-catalytic contributions to enzyme performances, module modifications, and innovative applications in various fields.

摘要

碳水化合物结合模块 (CBMs) 是广泛存在于碳水化合物活性酶 (CAZymes) 中的独立非催化结构域,它们通过引导附加的催化模块与目标底物结合,在 CAZymes 的底物结合过程中发挥着重要作用。由于其对不同底物具有精确的识别和选择性亲和力,CBMs 在过去几十年中受到了越来越多的研究关注。迄今为止,来自不同来源的 CBMs 已经形成了大量的家族,这些家族表现出各种不同的底物类型、结构特征和配体识别机制。此外,通过对 CBMs 特定位点的修饰以及与催化结构域的异源 CBMs 的融合,可以实现许多 CAZymes 的酶学性质和催化模式的改善。基于计算生物学、基因编辑和蛋白质工程的前沿技术,CBMs 作为辅助成分已经成为 CAZymes 进化和应用的可移动和高效工具。本综述旨在为未来新型 CBMs 的功能研究、合理设计和靶向利用提供理论参考,系统地综述了 CAZyme 衍生的 CBMs 在底物识别和结合机制、对酶性能的非催化贡献、模块修饰以及在各个领域的创新应用等方面的功能相关特征和潜力。

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