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长期储存的宫颈液基细胞学样本中 RNA 的完整性:对生物标志物研究的影响。

Integrity of RNA in long-term-stored cervical liquid-based cytology samples: implications for biomarker research.

机构信息

Centre for Virus Research, School of Infection and Immunity, College of Medical, Veterinary & Life Sciences, University of Glasgow, Glasgow, UK.

Current address: Gillies McIndoe Research Institute, Newtown, Wellington, 6242, New Zealand.

出版信息

Biotechniques. 2024;76(6):245-253. doi: 10.2144/btn-2023-0112. Epub 2024 May 1.

Abstract

Biobanks of cervical screening (LBC) samples annotated with disease status are an invaluable resource to support the development of tools for the risk stratification of disease. Although there is growing interest in the assessment of RNA-based biomarkers, little is known on the suitability and durability of stored clinical samples (commonly used in cervical screening) to support RNA-based research. RNA was extracted from 260 stored LBC samples. Storage at -80°C or -25°C allowed isolation of sufficient RNA for further analysis. RNA was found to be substantially degraded according to Agilent Bioanalyser data. Despite this, RT-qPCR was successful in 95% samples tested. These data suggest that biobanked LBC samples are suitable for RNA-based assessment even if stored for up to 14 years.

摘要

生物银行的宫颈筛查(巴氏涂片)样本标注疾病状态,是支持开发疾病风险分层工具的宝贵资源。尽管人们对基于 RNA 的生物标志物的评估越来越感兴趣,但对于储存的临床样本(常用于宫颈筛查)的适用性和耐久性,以支持基于 RNA 的研究,人们知之甚少。从 260 个储存的巴氏涂片样本中提取了 RNA。在-80°C 或-25°C 下储存,可分离出足够的 RNA 进行进一步分析。根据安捷伦 Bioanalyser 数据,RNA 明显降解。尽管如此,95%的测试样本的 RT-qPCR 仍然成功。这些数据表明,即使储存长达 14 年,生物银行储存的巴氏涂片样本也适合基于 RNA 的评估。

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