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端粒维持的三种分子亚型的相互作用定义了胃癌的临床特征和肿瘤微环境。

Cross-talk of Three Molecular Subtypes of Telomere Maintenance Defines Clinical Characteristics and Tumor Microenvironment in Gastric Cancer.

作者信息

Yan Mengpei, Zhang Zhijun, Wang Luyao, Huang Hongxin, Wang Jihuan, Zhu Chengjun, Li Zheng, Xu Zekuan

机构信息

Department of General Surgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, 210029, Jiangsu Province, China.

Collaborative Innovation Center for Cancer Personalized Medicine, Nanjing Medical University, Nanjing, Jiangsu Province, China.

出版信息

J Cancer. 2024 Apr 15;15(10):3227-3241. doi: 10.7150/jca.92207. eCollection 2024.

Abstract

Telomere maintenance takes part in the regulation of gastric cancer (GC) pathogenesis and is essential for patients' clinical features. Though the correlation between a single telomere maintenance-related gene and GC has previously been published, comprehensive exploration and systematic analysis remain to be studied. Our study is aimed at determining telomere maintenance-related molecular subtypes and examining their role in GC. By analyzing the transcriptome data, we identified three telomere maintenance-associated clusters (TMCs) with heterogeneity in clinical features and tumor microenvironment (TME). Then, we screened five prognostic telomere maintenance-related genes and established corresponding TM scores. Additionally, the expression level and biological function of tubulin beta 6 class V (TUBB6) were validated in GC tissues and cells. TMC1 was correlated with EMT and TGF-beta pathway and predicted low tumor mutation burden (TMB) as well as bad prognostic outcomes. TMC3 was associated with cell cycle and DNA repair. In terms of TMB and overall survival, TMC3 exhibited opposite results against TMC1. Significant heterogeneity was observed between TMCs. TUBB6 was upregulated and could promote GC proliferation, migration, and invasion. Altogether, combining bioinformatics and functional experiments, we identified three molecular subtypes based on telomere maintenance-associated genes in GC, which could bring new ideas and novel biomarkers to the clinic.

摘要

端粒维持参与胃癌(GC)发病机制的调控,对患者的临床特征至关重要。尽管此前已有关于单个端粒维持相关基因与GC之间相关性的报道,但全面探索和系统分析仍有待研究。我们的研究旨在确定端粒维持相关的分子亚型,并研究它们在GC中的作用。通过分析转录组数据,我们鉴定出三个端粒维持相关簇(TMC),它们在临床特征和肿瘤微环境(TME)方面存在异质性。然后,我们筛选出五个与预后相关的端粒维持相关基因,并建立了相应的TM评分。此外,在GC组织和细胞中验证了微管蛋白β6类V(TUBB6)的表达水平和生物学功能。TMC1与上皮-间质转化(EMT)和转化生长因子-β(TGF-β)途径相关,预测肿瘤突变负荷(TMB)较低以及预后不良。TMC3与细胞周期和DNA修复相关。在TMB和总生存期方面,TMC3与TMC1呈现相反的结果。TMC之间观察到显著的异质性。TUBB6上调并可促进GC的增殖、迁移和侵袭。总之,结合生物信息学和功能实验,我们在GC中基于端粒维持相关基因鉴定出三种分子亚型,这可为临床带来新的思路和新型生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e99/11064253/d3f0e045a7c4/jcav15p3227g001.jpg

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