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糖蛋白质组学和蛋白质组学分析表明,FliF 和 MotB 内的糖基化事件对于运动性是可有可无的。

Glycoproteomic and proteomic analysis of reveals glycosylation events within FliF and MotB are dispensable for motility.

机构信息

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Australia.

出版信息

Microbiol Spectr. 2024 Jun 4;12(6):e0034624. doi: 10.1128/spectrum.00346-24. Epub 2024 May 6.

Abstract

UNLABELLED

Across the Burkholderia genus -linked protein glycosylation is highly conserved. While the inhibition of glycosylation has been shown to be detrimental for virulence in complex species, such as , little is known about how specific glycosylation sites impact protein functionality. Within this study, we sought to improve our understanding of the breadth, dynamics, and requirement for glycosylation across the glycoproteome. Assessing the glycoproteome across different culture media using complementary glycoproteomic approaches, we increase the known glycoproteome to 141 glycoproteins. Leveraging this repertoire of glycoproteins, we quantitively assessed the glycoproteome of using Data-Independent Acquisition (DIA) revealing the glycoproteome is largely stable across conditions with most glycoproteins constitutively expressed. Examination of how the absence of glycosylation impacts the glycoproteome reveals that the protein abundance of only five glycoproteins (BCAL1086, BCAL2974, BCAL0525, BCAM0505, and BCAL0127) are altered by the loss of glycosylation. Assessing Δ (ΔBCAL0525), Δ (ΔBCAL0127), and ΔBCAM0505 strains, we demonstrate the loss of FliF, and to a lesser extent MotB, mirror the proteomic effects observed in the absence of glycosylation in Δ. While both MotB and FliF are essential for motility, we find loss of glycosylation sites in MotB or FliF does not impact motility supporting these sites are dispensable for function. Combined this work broadens our understanding of the glycoproteome supporting that the loss of glycoproteins in the absence of glycosylation is not an indicator of the requirement for glycosylation for protein function.

IMPORTANCE

is an opportunistic pathogen of concern within the Cystic Fibrosis community. Despite a greater appreciation of the unique physiology of gained over the last 20 years a complete understanding of the proteome and especially the O-glycoproteome, is lacking. In this study, we utilize systems biology approaches to expand the known glycoproteome as well as track the dynamics of glycoproteins across growth phases, culturing media and in response to the loss of glycosylation. We show that the glycoproteome of is largely stable across conditions and that the loss of glycosylation only impacts five glycoproteins including the motility associated proteins FliF and MotB. Examination of MotB and FliF shows, while these proteins are essential for motility, glycosylation is dispensable. Combined this work supports that glycosylation can be dispensable for protein function and may influence protein properties beyond stability.

摘要

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伯克霍尔德氏菌属相关蛋白糖基化高度保守。虽然糖基化的抑制已被证明对复杂物种(如)的毒力有害,但对于特定糖基化位点如何影响蛋白质功能知之甚少。在本研究中,我们试图更深入地了解糖蛋白组中糖基化的广度、动态和需求。使用互补的糖蛋白质组学方法评估不同培养基中的 糖蛋白组,我们将已知的糖蛋白组增加到 141 种糖蛋白。利用这一套糖蛋白,我们使用无依赖数据获取(DIA)定量评估了 的糖蛋白组,结果表明在大多数糖蛋白持续表达的情况下,该糖蛋白组在条件下基本稳定。检查糖基化缺失如何影响糖蛋白组,结果表明只有 5 种糖蛋白(BCAL1086、BCAL2974、BCAL0525、BCAM0505 和 BCAL0127)的蛋白丰度因糖基化缺失而改变。评估 Δ(ΔBCAL0525)、Δ(ΔBCAL0127)和 ΔBCAM0505 菌株,我们证明了 FliF 的缺失,以及在一定程度上 MotB 的缺失,反映了在没有糖基化的情况下在 Δ中观察到的蛋白质组学效应。虽然 MotB 和 FliF 对运动都是必不可少的,但我们发现 MotB 或 FliF 中糖基化位点的缺失并不影响运动,这表明这些位点对功能是可有可无的。综合这些工作拓宽了我们对 糖蛋白组的理解,支持在没有糖基化的情况下糖蛋白的缺失并不是蛋白质功能对糖基化需求的指标。

意义

是囊性纤维化社区中关注的机会性病原体。尽管在过去的 20 年里,人们对 的独特生理学有了更多的了解,但对其蛋白质组,特别是 O-糖蛋白组的了解仍然缺乏。在这项研究中,我们利用系统生物学方法来扩大已知的 糖蛋白组,并跟踪糖蛋白在生长阶段、培养介质以及对糖基化缺失的反应中的动态。我们表明, 的糖蛋白组在条件下基本稳定,糖基化的缺失仅影响包括运动相关蛋白 FliF 和 MotB 在内的 5 种糖蛋白。对 MotB 和 FliF 的研究表明,虽然这些蛋白对运动是必不可少的,但糖基化是可有可无的。综合这些工作表明, 糖基化可能对蛋白质功能可有可无,并可能影响蛋白质特性,而不仅仅是稳定性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c07/11237607/b8071c567a84/spectrum.00346-24.f001.jpg

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