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转录组学揭示了诱导糖尿病后三个不同时间点大鼠冈上肌腱“基因谱”的动态变化。

Transcriptomics reveals dynamic changes in the "gene profiles" of rat supraspinatus tendon at three different time points after diabetes induction.

机构信息

Department of Sports Medicine, The Affiliated Hospital of Qingdao University, Qingdao, 266000, Shandong, China.

Department of Abdominal Ultrasound, Affiliated Hospital of Qingdao University, Qingdao, 266000, Shandong, China.

出版信息

BMC Med Genomics. 2024 May 6;17(1):122. doi: 10.1186/s12920-024-01899-3.

Abstract

OBJECTIVE

There is increasing evidence that type 2 diabetes mellitus (T2DM) is an independent risk factor for the occur of tendinopathy. Therefore, this study is the first to explore the dynamic changes of the "gene profile" of supraspinatus tendon in rats at different time points after T2DM induction through transcriptomics, providing potential molecular markers for exploring the pathogenesis of diabetic tendinopathy.

METHODS

A total of 40 Sprague-Dawley rats were randomly divided into normal (NG, n = 10) and T2DM groups (T2DM, n = 30) and subdivided into three groups according to the duration of diabetes: T2DM-4w, T2DM-8w, and T2DM-12w groups; the duration was calculated from the time point of T2DM rat model establishment. The three comparison groups were set up in this study, T2DM-4w group vs. NG, T2DM-8w group vs. NG, and T2DM-12w group vs. NG. Differentially expressed genes (DEGs) in 3 comparison groups were screened. The intersection of the three comparison groups' DEGs was defined as key genes that changed consistently in the supraspinatus tendon after diabetes induction. Cluster analysis, gene ontology (GO) functional annotation analysis and Kyoto encyclopedia of genes and genomes (KEGG) functional annotation and enrichment analysis were performed for DEGs.

RESULTS

T2DM-4w group vs. NG, T2DM-8w group vs. NG, and T2DM-12w group vs. NG detected 519 (251 up-regulated and 268 down-regulated), 459 (342 up-regulated and 117 down-regulated) and 328 (255 up-regulated and 73 down-regulated) DEGs, respectively. 103 key genes of sustained changes in the supraspinatus tendon following induction of diabetes, which are the first identified biomarkers of the supraspinatus tendon as it progresses through the course of diabetes.The GO analysis results showed that the most significant enrichment in biological processes was calcium ion transmembrane import into cytosol (3 DEGs). The most significant enrichment in cellular component was extracellular matrix (9 DEGs). The most significant enrichment in molecular function was glutamate-gated calcium ion channel activity (3 DEGs). The results of KEGG pathway enrichment analysis showed that there were 17 major pathways (p < 0.05) that diabetes affected supratinusculus tendinopathy, including cAMP signaling pathway and Calcium signaling pathway.

CONCLUSIONS

Transcriptomics reveals dynamic changes in the"gene profiles"of rat supraspinatus tendon at three different time points after diabetes induction. The 103 DEGs identified in this study may provide potential molecular markers for exploring the pathogenesis of diabetic tendinopathy, and the 17 major pathways enriched in KEGG may provide new ideas for exploring the pathogenesis of diabetic tendinopathy.

摘要

目的

越来越多的证据表明 2 型糖尿病(T2DM)是腱病发生的独立危险因素。因此,本研究首次通过转录组学探索 T2DM 诱导后不同时间点大鼠冈上肌腱“基因谱”的动态变化,为探索糖尿病性腱病的发病机制提供潜在的分子标志物。

方法

将 40 只 Sprague-Dawley 大鼠随机分为正常组(NG,n=10)和 T2DM 组(T2DM,n=30),并根据糖尿病持续时间进一步分为 T2DM-4w、T2DM-8w 和 T2DM-12w 组;从 T2DM 大鼠模型建立的时间点开始计算持续时间。本研究设置了三组对比,T2DM-4w 组与 NG 组、T2DM-8w 组与 NG 组、T2DM-12w 组与 NG 组。筛选三组对比中差异表达基因(DEGs)。三组对比的交集被定义为糖尿病诱导后冈上肌腱中一致变化的关键基因。对 DEGs 进行聚类分析、基因本体(GO)功能注释分析和京都基因与基因组百科全书(KEGG)功能注释及富集分析。

结果

T2DM-4w 组与 NG 组、T2DM-8w 组与 NG 组、T2DM-12w 组与 NG 组分别检测到 519 个(251 个上调和 268 个下调)、459 个(342 个上调和 117 个下调)和 328 个(255 个上调和 73 个下调)DEGs。103 个关键基因在糖尿病诱导后冈上肌腱的持续变化,这是首次鉴定出的冈上肌腱作为糖尿病进程中进展的生物标志物。GO 分析结果显示,生物学过程中最显著的富集是钙离子跨膜内流到胞质(3 个 DEGs)。细胞成分中最显著的富集是细胞外基质(9 个 DEGs)。分子功能中最显著的富集是谷氨酸门控钙离子通道活性(3 个 DEGs)。KEGG 通路富集分析结果表明,糖尿病影响冈上肌腱病的主要通路有 17 个(p<0.05),包括 cAMP 信号通路和钙信号通路。

结论

转录组学揭示了糖尿病诱导后大鼠冈上肌腱在三个不同时间点“基因谱”的动态变化。本研究中鉴定的 103 个 DEGs 可能为探索糖尿病性腱病的发病机制提供潜在的分子标志物,KEGG 中富集的 17 条主要通路可能为探索糖尿病性腱病的发病机制提供新的思路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/286f/11071250/3066f944152b/12920_2024_1899_Fig1_HTML.jpg

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