Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, 9 Bankowa St., 40-007 Katowice, Poland.
Int J Mol Sci. 2024 Apr 25;25(9):4685. doi: 10.3390/ijms25094685.
To assess the impact of Enchytraeidae (potworms) on the functioning of the decomposer system, knowledge of the feeding preferences of enchytraeid species is required. Different food preferences can be explained by variations in enzymatic activities among different enchytraeid species, as there are no significant differences in the morphology or anatomy of their alimentary tracts. However, it is crucial to distinguish between the contribution of microbial enzymes and the animal's digestive capacity. Here, we computationally analyzed the endogenous digestive enzyme genes in . The analysis was based on RNA-Seq of COI-monohaplotype culture (PL-A strain) specimens, utilizing transcriptome profiling to determine the trophic position of the species. We also corroborated the results obtained using transcriptomics data from genetically heterogeneous freeze-tolerant strains. Our results revealed that . expresses a wide range of glycosidases, including GH9 cellulases and a specific digestive SH3b-domain-containing i-type lysozyme, previously described in the earthworm . Therefore, . combines traits of both primary decomposers (primary saprophytophages) and secondary decomposers (sapro-microphytophages/microbivores) and can be defined as an intermediate decomposer. Based on assemblies of publicly available RNA-Seq reads, we found close homologs for these cellulases and i-type lysozymes in various clitellate taxa, including Crassiclitellata and Enchytraeidae.
为了评估颤蚓(管蚯蚓)对分解者系统功能的影响,需要了解颤蚓物种的摄食偏好。不同的食物偏好可以通过不同颤蚓物种之间酶活性的变化来解释,因为它们的消化道的形态或解剖结构没有明显差异。然而,区分微生物酶和动物消化能力的贡献至关重要。在这里,我们通过计算分析了. 的内源性消化酶基因。该分析基于 COI-单型培养(PL-A 株)标本的 RNA-Seq,利用转录组谱分析确定了该物种的营养地位。我们还使用来自遗传异质耐冷冻菌株的转录组数据来验证结果。我们的研究结果表明,. 表达了广泛的糖苷酶,包括 GH9 纤维素酶和一种特定的消化 SH3b 结构域内含 i 型溶菌酶,先前在蚯蚓中描述过。因此,. 结合了初级分解者(初级腐生食者)和次级分解者(腐生-微生物食者/微生物食者)的特征,可以定义为中间分解者。基于公开可用的 RNA-Seq 读数的组装,我们在各种环节动物类群中发现了这些纤维素酶和 i 型溶菌酶的密切同源物,包括 Crassiclitellata 和 Enchytraeidae。