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利用空间基因表达分析揭示前列腺导管内癌的基因组景观。

Unveiling the Genomic Landscape of Intraductal Carcinoma of the Prostate Using Spatial Gene Expression Analysis.

机构信息

Department of Urology, Ehime University Graduate School of Medicine, Toon 791-0295, Japan.

Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.

出版信息

Int J Mol Sci. 2024 Apr 28;25(9):4818. doi: 10.3390/ijms25094818.

DOI:10.3390/ijms25094818
PMID:38732035
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11083946/
Abstract

Intraductal carcinoma of the prostate (IDCP) has recently attracted increasing interest owing to its unfavorable prognoses. To effectively identify the IDCP-specific gene expression profile, we took a novel approach of characterizing a typical IDCP case using spatial gene expression analysis. A formalin-fixed, paraffin-embedded sample was subjected to Visium CytAssist Spatial Gene Expression analysis. IDCP within invasive prostate cancer sites was recognized as a distinct cluster separate from other invasive cancer clusters. Highly expressed genes defining the IDCP cluster, such as , , , and , reflected the aggressive nature of high-grade prostate cancer. IDCP sites also showed increased hypoxia markers , , , and ; decreased fibroblast markers , , and ; and decreased immune cell markers and . Overall, these findings indicate that the hypoxic tumor microenvironment and reduced recruitment of fibroblasts and immune cells, which reflect morphological features of IDCP, may influence the aggressiveness of high-grade prostate cancer.

摘要

前列腺管内癌(IDCP)由于其不良预后,最近引起了越来越多的关注。为了有效地识别 IDCP 的特定基因表达谱,我们采用了一种新的方法,通过空间基因表达分析来描述一个典型的 IDCP 病例。一个福尔马林固定、石蜡包埋的样本被用于 Visium CytAssist 空间基因表达分析。在侵袭性前列腺癌部位内的 IDCP 被识别为一个与其他侵袭性癌症簇分离的独特簇。定义 IDCP 簇的高表达基因,如 、 、 、 和 ,反映了高级别前列腺癌的侵袭性。IDCP 部位还表现出增加的缺氧标志物 、 、 和 ;减少的成纤维细胞标志物 、 、 和 ;以及减少的免疫细胞标志物 、 。总的来说,这些发现表明,低氧肿瘤微环境和减少的成纤维细胞和免疫细胞募集,反映了 IDCP 的形态特征,可能影响高级别前列腺癌的侵袭性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90c3/11083946/04a53d668729/ijms-25-04818-g004a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90c3/11083946/383d2fc4a4ea/ijms-25-04818-g001a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90c3/11083946/fc9072c51ea9/ijms-25-04818-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90c3/11083946/8dc283be355c/ijms-25-04818-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90c3/11083946/04a53d668729/ijms-25-04818-g004a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90c3/11083946/383d2fc4a4ea/ijms-25-04818-g001a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90c3/11083946/fc9072c51ea9/ijms-25-04818-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90c3/11083946/8dc283be355c/ijms-25-04818-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90c3/11083946/04a53d668729/ijms-25-04818-g004a.jpg

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