Mun Haedam, Lorpaiboon Wanutcha, Ho Junming
School of Chemistry, The University of New South Wales, Sydney, NSW 2052, Australia.
J Phys Chem A. 2024 May 30;128(21):4391-4400. doi: 10.1021/acs.jpca.4c01407. Epub 2024 May 16.
Locating the lowest energy conformer is crucial for the accurate computation of equilibrium properties of molecular systems. This paper examines the performance of efficient low-cost methods in terms of the alignment and relative energies of their energy minima against the benchmark revDSD-PBEP86-D4/def2-TZVPP//MP2/cc-pVTZ potential energy surface. The low-cost methods considered include GFN-FF, GFN2-xTB, DFTB3, HF-3c, B97-3c, PBEh-3c, and rSCAN-3c composite methods against a diverse test set of 20 compounds including alkanes, perfluoroalkyl molecules, peptides, open-shell radicals, and Zn(II) complexes of varying sizes. The "3c" composite methods are generally more accurate, but are at least 2-3 orders of magnitude more expensive than tight-binding methods which have energy minima that align well with the benchmark potential energy surface. The findings of this paper were further exploited to introduce a simple strategy involving Grimme's CENSO energy-sorting algorithm that resulted in up to an order of magnitude reduction in computational time for locating the lowest energy conformer on the revDSD-PBEP86-D4/def2-TZVPP//MP2/cc-pVTZ surface.
找到能量最低的构象异构体对于精确计算分子体系的平衡性质至关重要。本文根据其能量最小值的排列以及相对于基准revDSD-PBEP86-D4/def2-TZVPP//MP2/cc-pVTZ势能面的相对能量,考察了高效低成本方法的性能。所考虑的低成本方法包括GFN-FF、GFN2-xTB、DFTB3、HF-3c、B97-3c、PBEh-3c和rSCAN-3c复合方法,针对的是一组包含烷烃、全氟烷基分子、肽、开壳自由基和不同大小的Zn(II)配合物的20种化合物的多样化测试集。“3c”复合方法通常更准确,但比紧密结合方法贵至少2 - 3个数量级,紧密结合方法的能量最小值与基准势能面排列良好。本文的研究结果被进一步用于引入一种涉及格林姆的CENSO能量排序算法的简单策略,该策略在revDSD-PBEP86-D4/def2-TZVPP//MP2/cc-pVTZ表面上找到能量最低的构象异构体的计算时间最多减少了一个数量级。