一个与外泌体相关的长链非编码 RNA 预后模型与肺腺癌的免疫微环境和治疗反应相关。

An exosomes-related lncRNA prognostic model correlates with the immune microenvironment and therapy response in lung adenocarcinoma.

机构信息

Department of Respiratory and Critical Care Medicine, Tangdu Hospital, Air Force Military Medical University, 569 Xinsi Road, Xi'an, 710038, Shaanxi, China.

出版信息

Clin Exp Med. 2024 May 18;24(1):104. doi: 10.1007/s10238-024-01319-x.

Abstract

Recent research highlights the significance of exosomes and long noncoding RNAs (lncRNAs) in cancer progression and drug resistance, but their role in lung adenocarcinoma (LUAD) is not fully understood. We analyzed 121 exosome-related (ER) mRNAs from the ExoBCD database, along with mRNA and lncRNA expression profiles of TCGA-LUAD using "DESeq2", "survival," "ConsensusClusterPlus," "GSVA," "estimate," "glmnet," "clusterProfiler," "rms," and "pRRophetic" R packages. This comprehensive approach included univariate cox regression, unsupervised consensus clustering, GSEA, functional enrichment analysis, and prognostic model construction. Our study identified 134 differentially expressed ER-lncRNAs, with 19 linked to LUAD prognosis. These ER-lncRNAs delineated two patient subtypes, one with poorer outcomes. Additionally, 286 differentially expressed genes were related to these ER-lncRNAs, 261 of which also correlated with LUAD prognosis. We constructed an ER-lncRNA-related prognostic model and calculated an ER-lncRNA-related risk score (ERS), revealing that a higher ERS correlates with poor overall survival in both the Meta cohort and two validation cohorts. The ERS potentially serves as an independent prognostic factor, and the prognostic model demonstrates superior predictive power. Notably, significant differences in the immune landscape were observed between the high- and low-ERS groups. Drug sensitivity analysis indicated varying responses to common chemotherapy drugs based on ERS stratification, with the high-ERS group showing greater sensitivity, except to rapamycin and erlotinib. Experimental validation confirmed that thymidine kinase 1 enhances lung cancer invasion, metastasis, and cell cycle progression. Our study pioneers an ER-lncRNA-related prognostic model for LUAD, proposing that ERS-based risk stratification could inform personalized treatment strategies to improve patient outcomes.

摘要

最近的研究强调了外泌体和长链非编码 RNA(lncRNA)在癌症进展和耐药性中的重要性,但它们在肺腺癌(LUAD)中的作用尚未完全阐明。我们分析了 ExoBCD 数据库中的 121 个外泌体相关(ER)mRNA,以及 TCGA-LUAD 的 mRNA 和 lncRNA 表达谱,使用了“DESeq2”、“survival”、“ConsensusClusterPlus”、“GSVA”、“estimate”、“glmnet”、“clusterProfiler”、“rms”和“pRRophetic”R 包。这种综合方法包括单变量 cox 回归、无监督共识聚类、GSEA、功能富集分析和预后模型构建。我们的研究确定了 134 个差异表达的 ER-lncRNA,其中 19 个与 LUAD 预后相关。这些 ER-lncRNA 描绘了两种患者亚型,其中一种预后较差。此外,与这些 ER-lncRNA 相关的 286 个差异表达基因中,有 261 个也与 LUAD 预后相关。我们构建了一个 ER-lncRNA 相关的预后模型,并计算了一个 ER-lncRNA 相关风险评分(ERS),发现较高的 ERS 与 Meta 队列和两个验证队列中的总生存期较差相关。ERS 可能是一个独立的预后因素,并且该预后模型具有更好的预测能力。值得注意的是,在高和低 ERS 组之间观察到免疫景观存在显著差异。药物敏感性分析表明,基于 ERS 分层,对常见化疗药物的反应存在差异,高 ERS 组的敏感性更高,除了雷帕霉素和厄洛替尼。实验验证证实胸苷激酶 1 增强了肺癌的侵袭、转移和细胞周期进展。我们的研究为 LUAD 提出了一个 ER-lncRNA 相关的预后模型,提出基于 ERS 的风险分层可以为个性化治疗策略提供信息,以改善患者的预后。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/44d3/11102376/1544fc053b1d/10238_2024_1319_Fig1_HTML.jpg

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