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凝聚物材料特性与染色质异质性的相互作用决定了核凝聚物的成熟。

Interplay of condensate material properties and chromatin heterogeneity governs nuclear condensate ripening.

作者信息

Banerjee Deb Sankar, Chigumira Tafadzwa, Lackner Rachel M, Kratz Josiah C, Chenoweth David M, Banerjee Shiladitya, Zhang Huaiying

机构信息

Department of Physics, Carnegie Mellon University, Pittsburgh, PA 15213, USA.

Present address: James Franck Institute, University of Chicago, Chicago, IL 60637, USA.

出版信息

bioRxiv. 2024 Aug 21:2024.05.07.593010. doi: 10.1101/2024.05.07.593010.

Abstract

Nuclear condensates play many important roles in chromatin functions, but how cells regulate their nucleation and growth within the complex nuclear environment is not well understood. Here, we report how condensate properties and chromatin mechanics dictate condensate growth dynamics in the nucleus. We induced condensates with distinct properties using different proteins in human cell nuclei and monitored their growth. We revealed two key physical mechanisms that underlie droplet growth: diffusion-driven or ripening-dominated growth. To explain the experimental observations, we developed a quantitative theory that uncovers the mechanical role of chromatin and condensate material properties in regulating condensate growth in a heterogeneous environment. By fitting our theory to experimental data, we find that condensate surface tension is critical in determining whether condensates undergo elastic or Ostwald ripening. Our model also predicts that chromatin heterogeneity can influence condensate nucleation and growth, which we validated by experimentally perturbing the chromatin organization and controlling condensate nucleation. By combining quantitative experimentation with theoretical modeling, our work elucidates how condensate surface tension and chromatin heterogeneity govern nuclear condensate ripening, implying that cells can control both condensate properties and the chromatin organization to regulate condensate growth in the nucleus.

摘要

核凝聚物在染色质功能中发挥着许多重要作用,但细胞如何在复杂的核环境中调节它们的成核和生长还不太清楚。在这里,我们报告了凝聚物特性和染色质力学如何决定细胞核中凝聚物的生长动力学。我们在人类细胞核中使用不同的蛋白质诱导出具有不同特性的凝聚物,并监测它们的生长。我们揭示了液滴生长背后的两个关键物理机制:扩散驱动生长或熟化主导生长。为了解释实验观察结果,我们发展了一种定量理论,该理论揭示了染色质的力学作用和凝聚物材料特性在异质环境中调节凝聚物生长的作用。通过将我们的理论与实验数据拟合,我们发现凝聚物表面张力对于确定凝聚物是否经历弹性熟化或奥斯特瓦尔德熟化至关重要。我们的模型还预测染色质异质性会影响凝聚物的成核和生长,我们通过实验扰动染色质组织和控制凝聚物成核来验证了这一点。通过将定量实验与理论建模相结合,我们的工作阐明了凝聚物表面张力和染色质异质性如何控制核凝聚物的熟化,这意味着细胞可以控制凝聚物特性和染色质组织来调节细胞核中凝聚物的生长。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8816/11423046/efed64418544/nihpp-2024.05.07.593010v2-f0001.jpg

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