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来自西太平洋的一种新型Mamiellophycean绿藻的基因组特征与生态分布

Genomic characterisation and ecological distribution of : a novel Mamiellophycean green alga from the Western Pacific.

作者信息

Rey Redondo Elvira, Xu Yangbing, Yung Charmaine Cheuk Man

机构信息

Department of Ocean Science, The Hong Kong University of Science and Technology, Kowloon, Hong Kong SAR, China.

出版信息

Front Microbiol. 2024 May 7;15:1358574. doi: 10.3389/fmicb.2024.1358574. eCollection 2024.

DOI:10.3389/fmicb.2024.1358574
PMID:38774501
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11106453/
Abstract

Mamiellophyceae are dominant marine algae in much of the ocean, the most prevalent genera belonging to the order Mamiellales: , and , whose genetics and global distributions have been extensively studied. Conversely, the genus , despite its potential ecological importance, remains relatively under-characterised. In this study, we isolated and characterised a novel species of Mamiellophyceae, , from subtropical coastal waters in the South China Sea. Morphologically, it resembles other species; however, a comparative analysis of the 18S and ITS2 marker genes revealed its genetic distinctiveness. Furthermore, we sequenced and assembled the first genome of , uncovering significant differences from previously studied Mamiellophyceae species. Notably, the genome lacked any detectable outlier chromosomes and exhibited numerous unique orthogroups. We explored gene groups associated with meiosis, scale and flagella formation, shedding light on species divergence, yet further investigation is warranted. To elucidate the biogeography of , we conducted a comprehensive analysis using global metagenomic read mapping to the newly sequenced genome. Our findings indicate this species exhibits a cosmopolitan distribution with a low-level prevalence worldwide. Understanding the intricate dynamics between Mamiellophyceae and the environment is crucial for comprehending their impact on the ocean ecosystem and accurately predicting their response to forthcoming environmental changes.

摘要

海洋微型绿藻纲是海洋大部分区域的优势海藻,最常见的属属于微绿球藻目:微绿球藻属、拟微绿球藻属和巴夫藻属,其遗传学和全球分布已得到广泛研究。相反,扁藻属尽管具有潜在的生态重要性,但其特征仍相对较少。在本研究中,我们从中国南海亚热带沿海水域分离并鉴定了一种新的海洋微型绿藻纲物种,南海扁藻。在形态上,它与其他扁藻属物种相似;然而,对18S和ITS2标记基因的比较分析揭示了其遗传独特性。此外,我们对南海扁藻的首个基因组进行了测序和组装,发现其与先前研究的海洋微型绿藻纲物种存在显著差异。值得注意的是,该基因组没有任何可检测到的异常染色体,并且展示出许多独特的直系同源基因簇。我们探索了与减数分裂、鳞片和鞭毛形成相关的基因组,揭示了物种分化情况,但仍需进一步研究。为了阐明南海扁藻的生物地理学,我们使用全球宏基因组读数比对新测序的基因组进行了全面分析。我们的研究结果表明,该物种在全球范围内呈现出广泛分布,但流行程度较低。了解海洋微型绿藻纲与环境之间的复杂动态关系对于理解它们对海洋生态系统的影响以及准确预测它们对未来环境变化的反应至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/1e10b81c36b9/fmicb-15-1358574-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/d631c8cf49d9/fmicb-15-1358574-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/511f18a6c799/fmicb-15-1358574-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/36efab26e3c1/fmicb-15-1358574-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/95cc0a6e715c/fmicb-15-1358574-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/0fbb37354c2c/fmicb-15-1358574-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/dec8c25f9882/fmicb-15-1358574-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/476c20a1ea29/fmicb-15-1358574-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/1e10b81c36b9/fmicb-15-1358574-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/d631c8cf49d9/fmicb-15-1358574-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/511f18a6c799/fmicb-15-1358574-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/36efab26e3c1/fmicb-15-1358574-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/95cc0a6e715c/fmicb-15-1358574-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/0fbb37354c2c/fmicb-15-1358574-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/dec8c25f9882/fmicb-15-1358574-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/476c20a1ea29/fmicb-15-1358574-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b390/11106453/1e10b81c36b9/fmicb-15-1358574-g008.jpg

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