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基于代谢阻断的海葵相关 sp. S1502 的基因组挖掘鉴定出非典型蒽环类化合物 WS-5995 A-E:分离、鉴定、生物合成研究和生物活性。

Metabolic Blockade-Based Genome Mining of Sea Anemone-Associated sp. S1502 Identifies Atypical Angucyclines WS-5995 A-E: Isolation, Identification, Biosynthetic Investigation, and Bioactivities.

机构信息

CAS Key Laboratory of Tropical Marine Bio-Resources and Ecology, RNAM Center for Marine Microbiology, Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Haizhu District, Guangzhou 510301, China.

College of Oceanology, University of Chinese Academy of Sciences, Qingdao 266400, China.

出版信息

Mar Drugs. 2024 Apr 25;22(5):195. doi: 10.3390/md22050195.

DOI:10.3390/md22050195
PMID:38786587
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11122949/
Abstract

Marine symbiotic and epiphyte microorganisms are sources of bioactive or structurally novel natural products. Metabolic blockade-based genome mining has been proven to be an effective strategy to accelerate the discovery of natural products from both terrestrial and marine microorganisms. Here, the metabolic blockade-based genome mining strategy was applied to the discovery of other metabolites in a sea anemone-associated sp. S1502. We constructed a mutant sp. S1502/Δ that switched to producing the atypical angucyclines WS-5995 A-E, among which WS-5995 E is a new compound. A biosynthetic gene cluster () of the angucyclines was identified through gene knock-out and heterologous expression studies. The biosynthetic pathways of WS-5995 A-E were proposed, the roles of some tailoring and regulatory genes were investigated, and the biological activities of WS-5995 A-E were evaluated. WS-5995 A has significant anti- activity with an IC value of 2.21 μM. The production of antibacterial streptopyrroles and anticoccidial WS-5995 A-E may play a protective role in the mutual relationship between sp. S1502 and its host.

摘要

海洋共生和附生微生物是生物活性或结构新颖的天然产物的来源。基于代谢阻断的基因组挖掘已被证明是加速发现陆地和海洋微生物中天然产物的有效策略。在这里,我们将基于代谢阻断的基因组挖掘策略应用于发现与海葵相关的 sp. S1502 中的其他代谢产物。我们构建了一个突变体 sp. S1502/Δ,它转而产生非典型的蒽环类化合物 WS-5995 A-E,其中 WS-5995 E 是一种新化合物。通过基因敲除和异源表达研究,鉴定了蒽环类化合物的生物合成基因簇 ()。提出了 WS-5995 A-E 的生物合成途径,研究了一些修饰和调节基因的作用,并评估了 WS-5995 A-E 的生物活性。WS-5995 A 具有显著的抗活性,IC 值为 2.21 μM。抗菌链霉菌吡咯和抗球虫 WS-5995 A-E 的产生可能在 sp. S1502 与其宿主之间的相互关系中发挥保护作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/628e/11122949/666b26ab2e55/marinedrugs-22-00195-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/628e/11122949/0130a9831c6e/marinedrugs-22-00195-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/628e/11122949/bc3f86bd347a/marinedrugs-22-00195-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/628e/11122949/217517acbe52/marinedrugs-22-00195-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/628e/11122949/a084e25dab20/marinedrugs-22-00195-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/628e/11122949/666b26ab2e55/marinedrugs-22-00195-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/628e/11122949/0130a9831c6e/marinedrugs-22-00195-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/628e/11122949/bc3f86bd347a/marinedrugs-22-00195-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/628e/11122949/217517acbe52/marinedrugs-22-00195-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/628e/11122949/a084e25dab20/marinedrugs-22-00195-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/628e/11122949/666b26ab2e55/marinedrugs-22-00195-g005.jpg

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本文引用的文献

1
Promoter engineering of natural product biosynthetic gene clusters in actinomycetes: concepts and applications.放线菌中天然产物生物合成基因簇的启动子工程:概念与应用。
Nat Prod Rep. 2024 Apr 24;41(4):672-699. doi: 10.1039/d3np00049d.
2
Genome-Directed Discovery of Bicyclic Cinnamoyl-Containing Nonribosomal Peptides with Anticoronaviral Activity from .基于基因组导向从……发现具有抗冠状病毒活性的含双环肉桂酰基的非核糖体肽
Org Lett. 2023 Jul 7;25(26):4874-4879. doi: 10.1021/acs.orglett.3c01683. Epub 2023 Jun 26.
3
Six Sets of Aromatic Polyketides Differing in Size and Shape Derive from a Single Biosynthetic Gene Cluster.
六组在大小和形状上不同的芳香族聚酮类化合物源自单个生物合成基因簇。
J Nat Prod. 2023 Jun 23;86(6):1512-1519. doi: 10.1021/acs.jnatprod.3c00202. Epub 2023 May 18.
4
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation.antiSMASH 7.0:用于检测、调控、化学结构和可视化的全新且改进的预测功能。
Nucleic Acids Res. 2023 Jul 5;51(W1):W46-W50. doi: 10.1093/nar/gkad344.
5
CAGECAT: The CompArative GEne Cluster Analysis Toolbox for rapid search and visualisation of homologous gene clusters.CAGECAT:比较基因簇分析工具箱,用于快速搜索和可视化同源基因簇。
BMC Bioinformatics. 2023 May 3;24(1):181. doi: 10.1186/s12859-023-05311-2.
6
MGCEP 1.0: A Genetic-Engineered Marine-Derived Chassis Cell for a Scaled Heterologous Expression Platform of Microbial Bioactive Metabolites.MGCEP1.0:一种基于基因工程海洋衍生底盘细胞的微生物活性代谢产物规模化异源表达平台。
ACS Synth Biol. 2022 Nov 18;11(11):3772-3784. doi: 10.1021/acssynbio.2c00362. Epub 2022 Oct 14.
7
Biochemical and structural insights of multifunctional flavin-dependent monooxygenase FlsO1-catalyzed unexpected xanthone formation.多功能黄素依赖性单加氧酶 FlsO1 催化的意外蒽醌形成的生化和结构见解。
Nat Commun. 2022 Sep 14;13(1):5386. doi: 10.1038/s41467-022-33131-0.
8
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9
Bacterial Associates of a Desert Specialist Fungus-Growing Ant Antagonize Competitors with a Nocamycin Analog.荒漠专性真菌共生菌拮抗竞争种的物质基础:一种诺卡霉素类似物
ACS Chem Biol. 2022 Jul 15;17(7):1824-1830. doi: 10.1021/acschembio.2c00187. Epub 2022 Jun 22.
10
Investigation of the Molecular Landscape of Bacterial Aromatic Polyketides by Global Analysis of Type II Polyketide Synthases.通过II型聚酮合酶的全局分析研究细菌芳香族聚酮化合物的分子格局
Angew Chem Int Ed Engl. 2022 Jun 13;61(24):e202202286. doi: 10.1002/anie.202202286. Epub 2022 Apr 21.