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利用特异性设计引物对拉策堡属(膜翅目:巨痣细蜂科)线粒体基因组的特征分析

Characterization of the Mitogenome of the Genus Ratzeburg (Hymenoptera: Megaspilidae) with the Specific Designed Primers.

作者信息

Wang Xu, Zhao Wenjing, Cui Shanshan, Su Baoshan, Huang Yixin, Chen Huayan

机构信息

Anhui Provincial Key Laboratory of the Conservation and Exploitation of Biological Resources, College of Life Sciences, Anhui Normal University, Wuhu 241000, China.

Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100000, China.

出版信息

Animals (Basel). 2024 May 13;14(10):1454. doi: 10.3390/ani14101454.

Abstract

In Hymenoptera, the monophyly of Evaniomorpha has been the focus of debate among different scholars. In this study, we sequenced two mitochondrial genomes of (Hymenoptera: Megaspilidae) to analyze the mitochondrial genomic features of and provide new molecular data for phylogenetic studies of Evaniomorpha. The mitogenome sizes of and were 15,445 bp and 15,373 bp, respectively, with the of missing. The nucleotide composition was significantly biased toward adenine and thymine, with A + T contents of 81.2% () and 82.4% (). Using sp. (Ceraphronidae) as reference, the Ka/Ks values of and in were both greater than one, indicating that non-synonymous mutations are favored by Darwinian selection, which is rare in other hymenopteran species. Compared with sp. gene order, nine operations were identified in , including four reversals, four TDRLs (tandem duplication random losses) and one transposition, or four reversals and five TDRLs. Phylogenetic analysis of 40 mitochondrial genomes showed that Evaniomorpha was not a monophyletic group, which was also supported by the PBD values. Ceraphronoidea is a monophyletic group and is a sister to Aulacidae + Gasteruptiidae. Based on the conserved region of the newly sequenced mitochondrial genomes, a pair of specific primers MegaF/MegaR was designed for sequencing the genes in Megaspilidae and a 60% rate of success was achieved in the genus .

摘要

在膜翅目昆虫中,隐翅虫形态类群(Evaniomorpha)的单系性一直是不同学者争论的焦点。在本研究中,我们对两种(膜翅目:巨腹姬蜂科)的线粒体基因组进行了测序,以分析其线粒体基因组特征,并为隐翅虫形态类群的系统发育研究提供新的分子数据。两种的线粒体基因组大小分别为15445 bp和15373 bp,其中缺失。核苷酸组成明显偏向腺嘌呤和胸腺嘧啶,A + T含量分别为81.2%()和82.4%()。以(Ceraphronidae科)的某物种作为参考,两种在中的Ka/Ks值均大于1,表明非同义突变受到达尔文选择的青睐,这在其他膜翅目物种中很少见。与某物种的基因顺序相比,在中鉴定出9种操作,包括4次倒位、4次串联重复随机丢失(TDRLs)和1次转座,或4次倒位和5次TDRLs。对40个线粒体基因组的系统发育分析表明,隐翅虫形态类群不是一个单系类群,这也得到了PBD值的支持。角头姬蜂总科(Ceraphronoidea)是一个单系类群,是澳姬蜂科(Aulacidae)+长足姬蜂科(Gasteruptiidae)的姐妹类群。基于新测序的线粒体基因组保守区域,设计了一对特异性引物MegaF/MegaR,用于对巨腹姬蜂科的基因进行测序,在该属中获得了60%的成功率。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98c5/11117285/43e75e52e21c/animals-14-01454-g001.jpg

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本文引用的文献

1
Key innovations and the diversification of Hymenoptera.
Nat Commun. 2023 Mar 3;14(1):1212. doi: 10.1038/s41467-023-36868-4.
2
Mission possible: an optimised protocol for the unbarcodable Ceraphronoidea (Hymenoptera).
Biodivers Data J. 2022 Jun 30;10:e84860. doi: 10.3897/BDJ.10.e84860. eCollection 2022.
3
The complete mitochondrial genome of (Hymenoptera: Platygastridae): A novel tRNA secondary structure, gene rearrangements and phylogenetic implications.
Int J Parasitol Parasites Wildl. 2022 Jun 23;18:249-259. doi: 10.1016/j.ijppaw.2022.06.007. eCollection 2022 Aug.
5
Phylogenetic relationships among superfamilies of Hymenoptera.
Cladistics. 2012 Feb;28(1):80-112. doi: 10.1111/j.1096-0031.2011.00366.x. Epub 2011 Jul 21.
7
Contribution to the mitogenome diversity in Delphacinae: Phylogenetic and ecological implications.
Genomics. 2020 Mar;112(2):1363-1370. doi: 10.1016/j.ygeno.2019.08.005. Epub 2019 Aug 14.
8
Mitochondrial phylogenomics of the Hymenoptera.
Mol Phylogenet Evol. 2019 Feb;131:8-18. doi: 10.1016/j.ympev.2018.10.040. Epub 2018 Nov 3.
9
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549. doi: 10.1093/molbev/msy096.

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