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新型抗分枝杆菌α-烷基硝基苯甲酰胺的合成、活性、毒性及计算机模拟研究

Synthesis, Activity, Toxicity, and In Silico Studies of New Antimycobacterial -Alkyl Nitrobenzamides.

作者信息

Pais João P, Antoniuk Olha, Pires David, Delgado Tiago, Fortuna Andreia, Costa Paulo J, Anes Elsa, Constantino Luis

机构信息

Research Institute for Medicines (iMed.UL), Av. Prof. Gama Pinto, 1649-003 Lisboa, Portugal.

Faculdade de Fármácia, Universidade de Lisboa, Av. Prof. Gama Pinto, 1649-003 Lisboa, Portugal.

出版信息

Pharmaceuticals (Basel). 2024 May 9;17(5):608. doi: 10.3390/ph17050608.


DOI:10.3390/ph17050608
PMID:38794178
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11124399/
Abstract

Tuberculosis (TB) is a disease that plagues the frailest members of society. We have developed a family of -alkyl nitrobenzamides that exhibit promising antitubercular activities and can be considered a structural simplification of known inhibitors of decaprenylphosphoryl-β-D-ribofuranose 2'-oxidase (DprE1), an essential (Mtb) enzyme and an emergent antitubercular target. Hereby, we report the development of these compounds via a simple synthetic methodology as well as their stability, cytotoxicity, and antitubercular activity. Studying their activity revealed that the 3,5-dinitro and the 3-nitro-5-trifluoromethyl derivatives were the most active, and within these, the derivatives with intermediate lipophilicities presented the best activities (MIC of 16 ng/mL). Additionally, in an macrophage model of infection, the derivatives with chain lengths of six and twelve carbon atoms presented the best results, exhibiting activity profiles comparable to isoniazid. Although the proof is not definite, the assessment of susceptibility over multiple mycobacterial species, together with the structure similarities with known inhibitors of this enzyme, support DprE1 as a likely target of action for the compounds. This idea is also reinforced by the docking studies, where the fit of our more active compounds to the DprE1 binding pocket is very similar to what was observed for known inhibitors like DNB1.

摘要

结核病(TB)是一种困扰社会最脆弱群体的疾病。我们开发了一系列烷基硝基苯甲酰胺,它们表现出有前景的抗结核活性,可被视为对已知的癸酰基磷酸化-β-D-核呋喃糖2'-氧化酶(DprE1)抑制剂的结构简化,DprE1是结核分枝杆菌(Mtb)的一种必需酶,也是一个新出现的抗结核靶点。在此,我们报告了通过一种简单的合成方法开发这些化合物的过程,以及它们的稳定性、细胞毒性和抗结核活性。对它们活性的研究表明,3,5-二硝基和3-硝基-5-三氟甲基衍生物活性最高,在这些衍生物中,具有中等亲脂性的衍生物表现出最佳活性(最低抑菌浓度为16 ng/mL)。此外,在巨噬细胞感染模型中,碳链长度为6和12个碳原子的衍生物表现出最佳结果,其活性谱与异烟肼相当。尽管证据尚不确凿,但对多种分枝杆菌属菌种的药敏评估,以及与该酶已知抑制剂的结构相似性,支持DprE1是这些化合物可能的作用靶点。对接研究也强化了这一观点,我们活性更高的化合物与DprE1结合口袋的契合度与已知抑制剂如DNB1的观察结果非常相似。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/96ed/11124399/410eaa742598/pharmaceuticals-17-00608-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/96ed/11124399/52f3cc3c75b3/pharmaceuticals-17-00608-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/96ed/11124399/3edb41b31510/pharmaceuticals-17-00608-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/96ed/11124399/08418d0c46ec/pharmaceuticals-17-00608-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/96ed/11124399/410eaa742598/pharmaceuticals-17-00608-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/96ed/11124399/52f3cc3c75b3/pharmaceuticals-17-00608-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/96ed/11124399/3edb41b31510/pharmaceuticals-17-00608-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/96ed/11124399/08418d0c46ec/pharmaceuticals-17-00608-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/96ed/11124399/410eaa742598/pharmaceuticals-17-00608-g004.jpg

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Synthesis, Activity, Toxicity, and In Silico Studies of New Antimycobacterial -Alkyl Nitrobenzamides.

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[2]
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[3]
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[5]
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[8]
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[9]
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引用本文的文献

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Host-Directed Therapies Based on Protease Inhibitors to Control and HIV Coinfection.

Microorganisms. 2025-4-30

本文引用的文献

[1]
DprE1 Inhibitors: Enduring Aspirations for Future Antituberculosis Drug Discovery.

ChemMedChem. 2023-8-15

[2]
Nitrobenzoates and Nitrothiobenzoates with Activity against .

Microorganisms. 2023-4-8

[3]
Recent Advances of DprE1 Inhibitors against : Computational Analysis of Physicochemical and ADMET Properties.

ACS Omega. 2022-11-3

[4]
Benzoic Acid Derivatives as Prodrugs for the Treatment of Tuberculosis.

Pharmaceuticals (Basel). 2022-9-7

[5]
New developments in tuberculosis diagnosis and treatment.

Breathe (Sheff). 2022-3

[6]
Covid-19's Devastating Effect on Tuberculosis Care - A Path to Recovery.

N Engl J Med. 2022-4-21

[7]
Targeting Non-Replicating and Latent Infection: Alternatives and Perspectives (Mini-Review).

Int J Mol Sci. 2021-12-10

[8]
AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings.

J Chem Inf Model. 2021-8-23

[9]
Activation of benzoate model prodrugs by mycobacteria. Comparison with mammalian plasma and liver hydrolysis.

Eur J Pharm Sci. 2021-7-1

[10]
Synthetic molecules as DprE1 inhibitors: A patent review.

Expert Opin Ther Pat. 2021-8

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