Fox Geoffrey C, Poncha Karl F, Smith B Rutledge, van der Maas Lara N, Robbins Nathaniel N, Graham Bria, Dowen Jill M, Strahl Brian D, Young Nicolas L, Jain Kanishk
Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, School of Medicine, Chapel Hill, NC.
Verna & Marrs McLean Department of Biochemistry and Molecular Pharmacology, Baylor College of Medicine, Houston, TX.
bioRxiv. 2024 May 14:2024.05.13.590588. doi: 10.1101/2024.05.13.590588.
In an unmodified state, positively charged histone N-terminal tails engage nucleosomal DNA in a manner which restricts access to not only the underlying DNA, but also key tail residues subject to binding and/or modification. Charge-neutralizing modifications, such as histone acetylation, serve to disrupt this DNA-tail interaction, facilitating access to such residues. We previously showed that a polyacetylation-mediated chromatin "switch" governs the read-write capability of H3K4me3 by the MLL1 methyltransferase complex. Here, we discern the relative contributions of site-specific acetylation states along the H3 tail and extend our interrogation to other chromatin modifiers. We show that the contributions of H3 tail acetylation to H3K4 methylation by MLL1 are highly variable, with H3K18 and H3K23 acetylation exhibiting robust stimulatory effects, and that this extends to the related H3K4 methyltransferase complex, MLL4. We show that H3K4me1 and H3K4me3 are found preferentially co-enriched with H3 N-terminal tail proteoforms bearing dual H3K18 and H3K23 acetylation (H3{K18acK23ac}). We further show that this effect is specific to H3K4 methylation, while methyltransferases targeting other H3 tail residues (H3K9, H3K27, & H3K36), a methyltransferase targeting the nucleosome core (H3K79), and a kinase targeting a residue directly adjacent to H3K4 (H3T3) are insensitive to tail acetylation. Together, these findings indicate a unique and robust stimulation of H3K4 methylation by H3K18 and H3K23 acetylation and provide key insight into why H3K4 methylation is often associated with histone acetylation in the context of active gene expression.
在未修饰状态下,带正电荷的组蛋白N端尾巴与核小体DNA结合,这种结合方式不仅限制了对下层DNA的访问,还限制了对易于结合和/或修饰的关键尾巴残基的访问。电荷中和修饰,如组蛋白乙酰化,可破坏这种DNA-尾巴相互作用,便于对这些残基的访问。我们之前表明,多乙酰化介导的染色质“开关”通过MLL1甲基转移酶复合体控制H3K4me3的读写能力。在此,我们识别了H3尾巴上位点特异性乙酰化状态的相对贡献,并将研究扩展到其他染色质修饰因子。我们表明,H3尾巴乙酰化对MLL1介导的H3K4甲基化的贡献高度可变,H3K18和H3K23乙酰化表现出强烈的刺激作用,并且这种作用扩展到相关的H3K4甲基转移酶复合体MLL4。我们表明,H3K4me1和H3K4me3优先与带有H3K18和H3K23双乙酰化(H3{K18acK23ac})的H3 N端尾巴蛋白亚型共富集。我们进一步表明,这种效应是H3K4甲基化特有的,而靶向其他H3尾巴残基(H3K9、H3K27和H3K36)的甲基转移酶、靶向核小体核心(H3K79)的甲基转移酶以及靶向与H3K4直接相邻残基(H3T3)的激酶对尾巴乙酰化不敏感。总之,这些发现表明H3K18和H3K23乙酰化对H3K4甲基化有独特而强烈的刺激作用,并为在活跃基因表达背景下H3K4甲基化为何常与组蛋白乙酰化相关提供了关键见解。