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Natural language processing systems for extracting information from electronic health records about activities of daily living. A systematic review.

作者信息

Wieland-Jorna Yvonne, van Kooten Daan, Verheij Robert A, de Man Yvonne, Francke Anneke L, Oosterveld-Vlug Mariska G

机构信息

Netherlands Institute for Health Services Research (Nivel), Utrecht, Postbus 1568, 3500 BN, The Netherlands.

Tranzo, School of Social Sciences and Behavioural Research, Tilburg University, Tilburg, Postbus 90153, 5000 LE, The Netherlands.

出版信息

JAMIA Open. 2024 May 24;7(2):ooae044. doi: 10.1093/jamiaopen/ooae044. eCollection 2024 Jul.


DOI:10.1093/jamiaopen/ooae044
PMID:38798774
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11126158/
Abstract

OBJECTIVE: Natural language processing (NLP) can enhance research on activities of daily living (ADL) by extracting structured information from unstructured electronic health records (EHRs) notes. This review aims to give insight into the state-of-the-art, usability, and performance of NLP systems to extract information on ADL from EHRs. MATERIALS AND METHODS: A systematic review was conducted based on searches in Pubmed, Embase, Cinahl, Web of Science, and Scopus. Studies published between 2017 and 2022 were selected based on predefined eligibility criteria. RESULTS: The review identified 22 studies. Most studies (65%) used NLP for classifying unstructured EHR data on 1 or 2 ADL. Deep learning, combined with a ruled-based method or machine learning, was the approach most commonly used. NLP systems varied widely in terms of the pre-processing and algorithms. Common performance evaluation methods were cross-validation and train/test datasets, with F1, precision, and sensitivity as the most frequently reported evaluation metrics. Most studies reported relativity high overall scores on the evaluation metrics. DISCUSSION: NLP systems are valuable for the extraction of unstructured EHR data on ADL. However, comparing the performance of NLP systems is difficult due to the diversity of the studies and challenges related to the dataset, including restricted access to EHR data, inadequate documentation, lack of granularity, and small datasets. CONCLUSION: This systematic review indicates that NLP is promising for deriving information on ADL from unstructured EHR notes. However, what the best-performing NLP system is, depends on characteristics of the dataset, research question, and type of ADL.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6f1/11126158/c928e1ab44ad/ooae044f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6f1/11126158/c928e1ab44ad/ooae044f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6f1/11126158/c928e1ab44ad/ooae044f1.jpg

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本文引用的文献

[1]
Assessing the efficacy of machine learning algorithms for syncope classification: A systematic review.

MethodsX. 2023-12-6

[2]
Machine learning models to detect and predict patient safety events using electronic health records: A systematic review.

Int J Med Inform. 2023-12

[3]
The added value of text from Dutch general practitioner notes in predictive modeling.

J Am Med Inform Assoc. 2023-11-17

[4]
Detecting acute respiratory diseases in the pediatric population using cough sound features and machine learning: A systematic review.

Int J Med Inform. 2023-8

[5]
Natural Language Processing for Breast Imaging: A Systematic Review.

Diagnostics (Basel). 2023-4-14

[6]
Neurologic outcomes of carotid and other emergent interventions for ischemic stroke over 6 years with dataset enhanced by machine learning.

J Vasc Surg. 2022-11

[7]
Validation of a machine learning approach to estimate expanded disability status scale scores for multiple sclerosis.

Mult Scler J Exp Transl Clin. 2022-6-22

[8]
Linking Free Text Documentation of Functioning and Disability to the ICF With Natural Language Processing.

Front Rehabil Sci. 2021-11

[9]
Gross motor function prediction using natural language processing in cerebral palsy.

Dev Med Child Neurol. 2023-1

[10]
Availability of information on functional limitations in structured electronic health records data.

J Am Geriatr Soc. 2022-7

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