从重金属污染土壤中分离出的具有氧化锰（II）特性的细菌L3的全基因组序列。
Complete genome sequence of L3, a bacterium with Mn(II) oxidative property isolated from heavy metal-contaminated soils.
作者信息
Xue Lan, Guo Yueshuai, Tang Fengzhen, Chen Sha, Liao Fengfeng, Li Ding
机构信息
School of Life Sciences and Chemistry, Hunan University of Technology, Zhuzhou, China.
Zhuzhou City Joint Laboratory of Environmental Microbiology and Plant Resources Utilization, Hunan University of Technology, Zhuzhou, China.
出版信息
Microbiol Resour Announc. 2024 Jul 18;13(7):e0002624. doi: 10.1128/mra.00026-24. Epub 2024 May 29.
Abstract
L3, isolated from heavy metal-contaminated soils, possesses the ability of Mn(II) oxidation. To further enhance the understanding of genes involved in Mn(II) oxidation, the complete genome of this strain was sequenced and annotated, which has a total size of 6.39 Mb with a G + C content of 66.39%.
摘要
从重金属污染土壤中分离得到的L3菌株具有氧化二价锰的能力。为了进一步深入了解参与二价锰氧化的基因，对该菌株的全基因组进行了测序和注释，其基因组总大小为6.39 Mb，G + C含量为66.39%。
相似文献
1
Complete genome sequence of L3, a bacterium with Mn(II) oxidative property isolated from heavy metal-contaminated soils.从重金属污染土壤中分离出的具有氧化锰（II）特性的细菌L3的全基因组序列。
Microbiol Resour Announc. 2024 Jul 18;13(7):e0002624. doi: 10.1128/mra.00026-24. Epub 2024 May 29.
2
Discovery of a novel native bacterium of Providencia sp. with high biosorption and oxidation ability of manganese for bioleaching of heavy metal contaminated soils.发现一种新型的本土普罗威登斯菌（ Providencia sp. ），具有高生物吸附和氧化锰的能力，可用于生物淋滤重金属污染土壤。
Chemosphere. 2020 Feb;241:125039. doi: 10.1016/j.chemosphere.2019.125039. Epub 2019 Oct 5.
3
Draft Genome Sequence of Pseudomonas aeruginosa Strain Hex1T Isolated from Soils Contaminated with Used Lubricating Oil in Argentina.从阿根廷受用过的润滑油污染的土壤中分离出的铜绿假单胞菌菌株Hex1T的基因组序列草图
Genome Announc. 2017 Jan 12;5(2):e01473-16. doi: 10.1128/genomeA.01473-16.
4
sp. nov., a Mn(II)-oxidizing bacterium isolated from heavy metal contaminated soils in Hunan Province, China.一株新的分离自中国湖南省重金属污染土壤中的 Mn(II)-氧化细菌。
Int J Syst Evol Microbiol. 2022 Aug;72(8). doi: 10.1099/ijsem.0.005474.
5
Existence of a novel heavy metal-tolerant Pseudomonas aeruginosa strain Zambia SZK-17 Kabwe 1: the potential bioremediation agent in the heavy metal-contaminated area.一株新型耐重金属铜绿假单胞菌菌株 Zambia SZK-17 Kabwe1 的存在：重金属污染区潜在的生物修复剂。
Environ Monit Assess. 2022 Oct 14;194(12):887. doi: 10.1007/s10661-022-10565-z.
6
Biotoxic impact of heavy metals on growth, oxidative stress and morphological changes in root structure of wheat (Triticum aestivum L.) and stress alleviation by Pseudomonas aeruginosa strain CPSB1.重金属对小麦（Triticum aestivum L.）生长、氧化应激和根结构形态变化的生物毒性影响及铜绿假单胞菌 CPSB1 菌株的缓解作用。
Chemosphere. 2017 Oct;185:942-952. doi: 10.1016/j.chemosphere.2017.07.088. Epub 2017 Jul 19.
7
Simultaneous immobilization of multiple heavy metal(loid)s in contaminated water and alkaline soil inoculated Fe/Mn oxidizing bacterium.在接种铁/锰氧化细菌的污染水和碱性土壤中同时固定多种重金属（类金属）。
J Environ Sci (China). 2025 Jan;147:370-381. doi: 10.1016/j.jes.2023.11.010. Epub 2023 Nov 20.
8
Genome features of Pseudomonas putida LS46, a novel polyhydroxyalkanoate producer and its comparison with other P. putida strains.新型聚羟基脂肪酸酯产生菌恶臭假单胞菌LS46的基因组特征及其与其他恶臭假单胞菌菌株的比较。
AMB Express. 2014 May 22;4:37. doi: 10.1186/s13568-014-0037-8. eCollection 2014.
9
Draft Genome Sequence of Mn(II)-Oxidizing Pseudomonas resinovorans Strain MO-1.锰（II）氧化树脂食假单胞菌MO-1菌株的基因组序列草图
Genome Announc. 2018 Mar 15;6(11):e00088-18. doi: 10.1128/genomeA.00088-18.
10
Whole genome sequencing and comparative genomic analyses of Pseudomonas aeruginosa strain isolated from arable soil reveal novel insights into heavy metal resistance and codon biology.对来自耕地土壤的铜绿假单胞菌菌株进行全基因组测序和比较基因组分析，揭示了其在重金属抗性和密码子生物学方面的新见解。
Curr Genet. 2022 Aug;68(3-4):481-503. doi: 10.1007/s00294-022-01245-z. Epub 2022 Jun 28.
本文引用的文献
1
Antimony(III) removal by biogenic manganese oxides formed by Pseudomonas aeruginosa PA-1: kinetics and mechanisms.铜绿假单胞菌 PA-1 形成的生物锰氧化物去除三价锑：动力学和机制。
Environ Sci Pollut Res Int. 2023 Sep;30(43):97102-97114. doi: 10.1007/s11356-023-29277-z. Epub 2023 Aug 16.
2
Simultaneous antibiotic removal and mitigation of resistance induction by manganese bio-oxidation process.锰的生物氧化过程同时去除抗生素并减轻耐药性诱导。
Water Res. 2023 Oct 1;244:120442. doi: 10.1016/j.watres.2023.120442. Epub 2023 Aug 2.
3
sp. nov., a Mn(II)-oxidizing bacterium isolated from heavy metal contaminated soils in Hunan Province, China.一株新的分离自中国湖南省重金属污染土壤中的 Mn(II)-氧化细菌。
Int J Syst Evol Microbiol. 2022 Aug;72(8). doi: 10.1099/ijsem.0.005474.
4
Discovery of a novel native bacterium of Providencia sp. with high biosorption and oxidation ability of manganese for bioleaching of heavy metal contaminated soils.发现一种新型的本土普罗威登斯菌（ Providencia sp. ），具有高生物吸附和氧化锰的能力，可用于生物淋滤重金属污染土壤。
Chemosphere. 2020 Feb;241:125039. doi: 10.1016/j.chemosphere.2019.125039. Epub 2019 Oct 5.
5
tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences.tRNAscan-SE：在基因组序列中搜索tRNA基因。
Methods Mol Biol. 2019;1962:1-14. doi: 10.1007/978-1-4939-9173-0_1.
6
Comparative analysis of sequencing technologies for single-cell transcriptomics.单细胞转录组测序技术的比较分析。
Genome Biol. 2019 Apr 9;20(1):70. doi: 10.1186/s13059-019-1676-5.
7
Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes.无领导转录和非典型基因的建模可提高原核生物中基因预测的准确性。
Genome Res. 2018 Jul;28(7):1079-1089. doi: 10.1101/gr.230615.117. Epub 2018 May 17.
8
SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data.SOAPnuke：一种基于 MapReduce 加速的高通量测序数据集成质量控制和预处理软件。
Gigascience. 2018 Jan 1;7(1):1-6. doi: 10.1093/gigascience/gix120.
9
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
10
Rfam 12.0: updates to the RNA families database.Rfam 12.0：RNA家族数据库的更新
Nucleic Acids Res. 2015 Jan;43(Database issue):D130-7. doi: 10.1093/nar/gku1063. Epub 2014 Nov 11.
Zotero 插件