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提高中国铠蚧昆虫(半翅目:盾蚧科)的 DNA 条形码文库。

Improving DNA barcoding library of armored scale insects (Hemiptera: Diaspididae) in China.

机构信息

College of Plant Protection, Shanxi Agricultural University, Taigu, China.

Hainan Province Engineering Research Center for Quarantine, Prevention and Control of Exotic Pests, Haikou, China.

出版信息

PLoS One. 2024 May 30;19(5):e0301499. doi: 10.1371/journal.pone.0301499. eCollection 2024.

Abstract

DNA barcoding is used to identify cryptic species, survey environmental samples, and estimate phyletic and genetic diversity. Armored scale insects are phytophagous insects and are the most species-rich taxa in the Coccoidea superfamily. This study developed a DNA barcode library for armored scale insect species collected from southern China during 2021-2022. We sequenced a total of 239 specimens, recognized as 50 morphological species, representing two subfamilies and 21 genera. Sequencing analysis revealed that the average G + C content of the cytochrome oxidase subunit I (COI) gene sequence was very low (~18.06%) and that the average interspecific divergence was 10.07% while intraspecific divergence was 3.20%. The intraspecific divergence value was inflated by the high intraspecific divergence in ten taxa, which may indicate novel species overlooked by current taxonomic treatments. All the Automated Barcode Gap Discovery, Assemble Species by Automatic Partitioning, Taxon DNA analysis and Bayesian Poisson Tree Process methods yielded largely consistent results, indicating a robust and credible species delimitation. Based on these results, an intergeneric distance threshold of ≤ 5% was deemed appropriate for the differentiation of armored scale insect species in China. This study establishes a comprehensive barcode library for the identification of armored scale insects, future research, and application.

摘要

DNA 条形码技术被用于识别隐存种、调查环境样本,以及估计系统发育和遗传多样性。有甲目昆虫是植食性昆虫,是蚧总科中物种最丰富的类群。本研究构建了一个 2021-2022 年期间在中国南方采集的 armored scale insect 物种的 DNA 条形码文库。我们共对 239 个标本进行了测序,这些标本被鉴定为 50 个形态种,代表两个亚科和 21 个属。测序分析显示,细胞色素氧化酶亚基 I(COI)基因序列的平均 G + C 含量非常低(约 18.06%),种间平均分歧度为 10.07%,而种内分歧度为 3.20%。十个分类群的种内分歧度较高,导致种内分歧度值膨胀,这可能表明当前分类处理中忽略了一些新种。所有的自动条形码间隙发现、自动分区组装物种、分类单元 DNA 分析和贝叶斯泊松树过程方法都产生了非常一致的结果,表明了一种稳健可信的物种界定。基于这些结果,认为中国 armored scale insect 种间的距离阈值≤5%适合用于区分不同种类。本研究为 armored scale insect 的鉴定、未来研究和应用建立了一个全面的条形码文库。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70b1/11139323/1be48aa15870/pone.0301499.g001.jpg

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