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催化淀粉样蛋白中的挖掘与工程活动。

Mining and engineering activity in catalytic amyloids.

作者信息

Peña-Díaz Samuel, Ferreira Pedro, Ramos Maria João, Otzen Daniel E

机构信息

Interdisciplinary Nanoscience Center, Aarhus University, Aarhus, Denmark.

Faculdade de Ciencias, Universidad do Porto, Porto, Portugal.

出版信息

Methods Enzymol. 2024;697:345-422. doi: 10.1016/bs.mie.2024.03.002. Epub 2024 Apr 20.

Abstract

This chapter describes how to test different amyloid preparations for catalytic properties. We describe how to express, purify, prepare and test two types of pathological amyloid (tau and α-synuclein) and two functional amyloid proteins, namely CsgA from Escherichia coli and FapC from Pseudomonas. We therefore preface the methods section with an introduction to these two examples of functional amyloid and their remarkable structural and kinetic properties and high physical stability, which renders them very attractive for a range of nanotechnological designs, both for structural, medical and catalytic purposes. The simplicity and high surface exposure of the CsgA amyloid is particularly useful for the introduction of new functional properties and we therefore provide a computational protocol to graft active sites from an enzyme of interest into the amyloid structure. We hope that the methods described will inspire other researchers to explore the remarkable opportunities provided by bacterial functional amyloid in biotechnology.

摘要

本章描述了如何测试不同淀粉样蛋白制剂的催化特性。我们描述了如何表达、纯化、制备和测试两种病理性淀粉样蛋白(tau蛋白和α-突触核蛋白)以及两种功能性淀粉样蛋白,即来自大肠杆菌的CsgA和来自铜绿假单胞菌的FapC。因此,在方法部分之前,我们先介绍这两种功能性淀粉样蛋白的例子,以及它们显著的结构和动力学特性和高物理稳定性,这使得它们对于一系列纳米技术设计非常有吸引力,无论是用于结构、医学还是催化目的。CsgA淀粉样蛋白的简单性和高表面暴露性对于引入新的功能特性特别有用,因此我们提供了一个计算方案,将感兴趣的酶的活性位点嫁接到淀粉样蛋白结构中。我们希望所描述的方法将激发其他研究人员探索细菌功能性淀粉样蛋白在生物技术中提供的显著机会。

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