Cellular and Molecular Research Center, Cellular and Molecular Medicine Research Institute, Urmia University of Medical Sciences, Urmia, Iran.
Pharmaceutical Sciences Research Center, Shiraz University of Medical Sciences, Shiraz, Iran.
Recent Pat Biotechnol. 2024;18(4):332-343. doi: 10.2174/0118722083267796231210060150.
Cancer is a leading cause of death and a significant public health issue worldwide. Standard treatment methods such as chemotherapy, radiotherapy, and surgery are only sometimes effective. Therefore, new therapeutic approaches are needed for cancer treatment. Sea anemone actinoporins are pore-forming toxins (PFTs) with membranolytic activities. RTX-A is a type of PFT that interacts with membrane phospholipids, resulting in pore formation. The synthesis of recombinant proteins in a secretory form has several advantages, including protein solubility and easy purification. In this study, we aimed to discover suitable signal peptides for producing RTX-A in Bacillus subtilis in a secretory form.
Signal peptides were selected from the Signal Peptide Web Server. The probability and secretion pathways of the selected signal peptides were evaluated using the SignalP server. ProtParam and Protein-sol were used to predict the physico-chemical properties and solubility. AlgPred was used to predict the allergenicity of RTX-A linked to suitable signal peptides. Non-allergenic, stable, and soluble signal peptides fused to proteins were chosen, and their secondary and tertiary structures were predicted using GOR IV and I-TASSER, respectively. The PROCHECK server performed the validation of 3D structures.
According to bioinformatics analysis, the fusion forms of OSMY_ECOLI and MALE_ECOLI linked to RTX-A were identified as suitable signal peptides. The final proteins with signal peptides were stable, soluble, and non-allergenic for the human body. Moreover, they had appropriate secondary and tertiary structures.
The signal above peptides appears ideal for rationalizing secretory and soluble RTX-A. Therefore, the signal peptides found in this study should be further investigated through experimental researches and patents.
癌症是全球范围内导致死亡的主要原因之一,也是一个重大的公共卫生问题。化疗、放疗和手术等标准治疗方法并不总是有效。因此,需要新的治疗方法来治疗癌症。海葵肌动蛋白是具有膜溶解活性的孔形成毒素(PFT)。RTX-A 是一种 PFT,与膜磷脂相互作用,导致孔形成。以分泌形式合成重组蛋白具有许多优点,包括蛋白质溶解度和易于纯化。在这项研究中,我们旨在发现适合在枯草芽孢杆菌中以分泌形式生产 RTX-A 的信号肽。
从 Signal Peptide Web Server 中选择信号肽。使用 SignalP 服务器评估所选信号肽的概率和分泌途径。使用 ProtParam 和 Protein-sol 预测理化性质和溶解度。使用 AlgPred 预测与合适信号肽相连的 RTX-A 的变应原性。选择非变应原性、稳定且可溶的信号肽融合蛋白,并使用 GOR IV 和 I-TASSER 分别预测其二级和三级结构。使用 PROCHECK 服务器对 3D 结构进行验证。
根据生物信息学分析,鉴定出与 RTX-A 融合的 OSMY_ECOLI 和 MALE_ECOLI 的融合形式是合适的信号肽。带有信号肽的最终蛋白质对人体稳定、可溶且无变应原性。此外,它们具有适当的二级和三级结构。
上述信号肽似乎非常适合合理化分泌和可溶性 RTX-A。因此,本研究中发现的信号肽应通过实验研究和专利进一步研究。