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用于重组诊断抗原B8/1分泌性生产的信号肽分析方法

Analyzing Signal Peptides for Secretory Production of Recombinant Diagnostic Antigen B8/1 from : An Approach.

作者信息

Khatami Seyyed Hossein, Taheri-Anganeh Mortaza, Arianfar Farzane, Savardashtaki Amir, Sarkari Bahador, Ghasemi Younes, Mostafavi-Pour Zohreh

机构信息

Department of Biochemistry, School of Medicine, Shiraz University of Medical Sciences, Shiraz, Iran.

Cellular and Molecular Research Center, Research Institute on Cellular and MolecularMedicine, Urmia University of Medical Sciences, Urmia, Iran.

出版信息

Mol Biol Res Commun. 2020 Apr;9(1):1-10. doi: 10.22099/mbrc.2019.35429.1457.

Abstract

Recombinant AgB8/1 as the most evaluated antigen for serological diagnosis of Cystic Echinococcosis (CE) can provide early and accurate diagnosis for proper management and treatment of the disease. Thus, the secretory production of this recombinant protein is the main goal and the application of signal peptides at the N terminus of the desired protein can help to achieve this goal. The present study applied few bioinformatics tools to evaluate several signal peptides to offer the best candidate for extracellular production of AgB8/1 of in . The sequences related to signal peptides were obtained from "Signal Peptide Website" and were checked by "UniProt". In addition, UniProt was employed to retrieve the sequence of AgB8/1. Then, the probable signal peptide sequences and their cleavage site locations were determined by SignalP 4.1 followed by evaluation of their physicochemical features, using ProtParam. The solubility of the target recombinant proteins was accessed by SOLpro. Finally, PRED-TAT and ProtCompB were implemented to predict protein secretion pathways and final destinations. Among the 39 candidate signal peptides, ENTC2_STAAU and ENTC1_STAAU are the best ones which are stable and soluble in connection with AgB8/1 and can secrete target protein through Sec pathway. The signal peptides recommended in this investigation are valuable for rational designing of secretory stable and soluble AgB8/1. Such information is useful for future experimental production of the mentioned antigen.

摘要

重组抗原B8/1作为囊性包虫病(CE)血清学诊断中评估最多的抗原,可为该疾病的合理管理和治疗提供早期准确的诊断。因此,这种重组蛋白的分泌性生产是主要目标,在所需蛋白的N端应用信号肽有助于实现这一目标。本研究应用了一些生物信息学工具来评估几种信号肽,以提供用于在[具体物种]中胞外生产AgB8/1的最佳候选信号肽。与信号肽相关的序列从“信号肽网站”获取,并通过“UniProt”进行检查。此外,利用UniProt检索AgB8/1的序列。然后,通过SignalP 4.1确定可能的信号肽序列及其切割位点位置,随后使用ProtParam评估其理化特性。通过SOLpro评估目标重组蛋白的溶解性。最后,实施PRED - TAT和ProtCompB来预测蛋白质分泌途径和最终目的地。在39个候选信号肽中,ENTC2_STAAU和ENTC1_STAAU是最佳的,它们与AgB8/1结合时稳定且可溶,并能通过Sec途径分泌目标蛋白。本研究推荐的信号肽对于合理设计分泌性稳定且可溶的AgB8/1具有重要价值。此类信息对于上述抗原未来的实验性生产很有用。

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