Yu Tiantian, Hu Haining, Zeng Xianhong, Wang Yinzhao, Pan Donald, Deng Longhui, Liang Lewen, Hou Jialin, Wang Fengping
School of Oceanography Shanghai Jiao Tong University Shanghai China.
State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology Shanghai Jiao Tong University Shanghai China.
mLife. 2023 Sep 18;2(3):272-282. doi: 10.1002/mlf2.12082. eCollection 2023 Sep.
Lignin degradation is a major process in the global carbon cycle across both terrestrial and marine ecosystems. , which are among the most abundant microorganisms in marine sediment, have been proposed to mediate anaerobic lignin degradation. However, the mechanism of bathyarchaeial lignin degradation remains unclear. Here, we report an enrichment culture of , named Baizosediminiarchaeum ligniniphilus DL1YTT001 (. B. ligniniphilus), from coastal sediments that can grow with lignin as the sole organic carbon source under mesophilic anoxic conditions. . B. ligniniphilus possesses and highly expresses novel methyltransferase 1 (MT1, ) for transferring methoxyl groups from lignin monomers to cob(I)alamin. MtgBs have no homology with known microbial methyltransferases and are present only in bathyarchaeial lineages. Heterologous expression of the gene confirmed -demethylation activity. The genes were identified in metagenomic data sets from a wide range of coastal sediments, and they were highly expressed in coastal sediments from the East China Sea. These findings suggest that , capable of -demethylation via their novel and specific methyltransferases, are ubiquitous in coastal sediments.
木质素降解是陆地和海洋生态系统全球碳循环中的一个主要过程。已提出在海洋沉积物中含量最为丰富的微生物之一来介导厌氧木质素降解。然而,深海古菌木质素降解的机制仍不清楚。在此,我们报告了一种来自沿海沉积物的富集培养物,命名为嗜木质素白泽古菌DL1YTT001(B. ligniniphilus),它能够在中温缺氧条件下以木质素作为唯一有机碳源生长。嗜木质素白泽古菌拥有并高度表达新型甲基转移酶1(MT1),用于将木质素单体中的甲氧基转移至钴胺素(I)。MtgBs与已知的微生物甲基转移酶没有同源性,且仅存在于深海古菌谱系中。该基因的异源表达证实了去甲基化活性。在来自广泛沿海沉积物的宏基因组数据集中鉴定出了这些基因,并且它们在东海的沿海沉积物中高度表达。这些发现表明,能够通过其新型且特异的甲基转移酶进行去甲基化的嗜木质素白泽古菌在沿海沉积物中广泛存在。