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犬类饲养的遗传结构:97552 名欧洲血统个体的全基因组关联研究的大规模研究。

The genetic architecture of dog ownership: large-scale genome-wide association study in 97,552 European-ancestry individuals.

机构信息

Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm SE-171 77, Sweden.

Department of Behavioural Science and Health, Institute of Epidemiology and Health Care, University College London, London WC1E 7HBUK.

出版信息

G3 (Bethesda). 2024 Aug 7;14(8). doi: 10.1093/g3journal/jkae116.

Abstract

Dog ownership has been associated with several complex traits, and there is evidence of genetic influence. We performed a genome-wide association study of dog ownership through a meta-analysis of 31,566 Swedish twins in 5 discovery cohorts and an additional 65,986 European-ancestry individuals in 3 replication cohorts from Sweden, Norway, and the United Kingdom. Association tests with >7.4 million single-nucleotide polymorphisms were meta-analyzed using a fixed effect model after controlling for population structure and relatedness. We identified 2 suggestive loci using discovery cohorts, which did not reach genome-wide significance after meta-analysis with replication cohorts. Single-nucleotide polymorphism-based heritability of dog ownership using linkage disequilibrium score regression was estimated at 0.123 (CI 0.038-0.207) using the discovery cohorts and 0.018 (CI -0.002 to 0.039) when adding in replication cohorts. Negative genetic correlation with complex traits including type 2 diabetes, depression, neuroticism, and asthma was only found using discovery summary data. Furthermore, we did not identify any genes/gene-sets reaching even a suggestive level of significance. This genome-wide association study does not, by itself, provide clear evidence on common genetic variants that influence dog ownership among European-ancestry individuals.

摘要

养狗与多种复杂特征有关,并有遗传影响的证据。我们通过对瑞典 5 个发现队列中的 31566 对瑞典双胞胎和来自瑞典、挪威和英国的 3 个复制队列中的另外 65986 个欧洲血统个体进行荟萃分析,对养狗进行了全基因组关联研究。在控制了人口结构和相关性之后,使用固定效应模型对超过 740 万个单核苷酸多态性进行了关联测试,并进行了荟萃分析。我们使用发现队列确定了 2 个提示性位点,但在与复制队列的荟萃分析后未达到全基因组显着性。使用连锁不平衡评分回归,基于单核苷酸多态性的养狗遗传力在发现队列中估计为 0.123(CI 0.038-0.207),在添加复制队列时估计为 0.018(CI-0.002 至 0.039)。仅使用发现汇总数据才发现与包括 2 型糖尿病、抑郁症、神经质和哮喘在内的复杂特征的负遗传相关性。此外,我们没有发现任何基因/基因集达到甚至提示性显着水平。这项全基因组关联研究本身并没有为影响欧洲血统个体养狗的常见遗传变异提供明确的证据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3405/11304603/7bee529a2f61/jkae116f1.jpg

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