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海绵蛾飞行的遗传学研究(Lymantria dispar ssp.):复杂入侵特性的功能综合分析。

Genetics of flight in spongy moths (Lymantria dispar ssp.): functionally integrated profiling of a complex invasive trait.

机构信息

Natural Resources Canada, Pacific Forestry Centre, Canadian Forest Service, 506 Burnside Road West, Victoria, BC, V8Z 1M5, Canada.

Natural Resources Canada, Laurentian Forestry Centre, Canadian Forest Service, 1055 Rue du PEPS, Quebec City, Québec, G1V 4C7, Canada.

出版信息

BMC Genomics. 2024 May 31;25(1):541. doi: 10.1186/s12864-023-09936-8.

Abstract

BACKGROUND

Flight can drastically enhance dispersal capacity and is a key trait defining the potential of exotic insect species to spread and invade new habitats. The phytophagous European spongy moths (ESM, Lymantria dispar dispar) and Asian spongy moths (ASM; a multi-species group represented here by L. d. asiatica and L. d. japonica), are globally invasive species that vary in adult female flight capability-female ASM are typically flight capable, whereas female ESM are typically flightless. Genetic markers of flight capability would supply a powerful tool for flight profiling of these species at any intercepted life stage. To assess the functional complexity of spongy moth flight and to identify potential markers of flight capability, we used multiple genetic approaches aimed at capturing complementary signals of putative flight-relevant genetic divergence between ESM and ASM: reduced representation genome-wide association studies, whole genome sequence comparisons, and developmental transcriptomics. We then judged the candidacy of flight-associated genes through functional analyses aimed at addressing the proximate demands of flight and salient features of the ecological context of spongy moth flight evolution.

RESULTS

Candidate gene sets were typically non-overlapping across different genetic approaches, with only nine gene annotations shared between any pair of approaches. We detected an array of flight-relevant functional themes across gene sets that collectively suggest divergence in flight capability between European and Asian spongy moth lineages has coincided with evolutionary differentiation in multiple aspects of flight development, execution, and surrounding life history. Overall, our results indicate that spongy moth flight evolution has shaped or been influenced by a large and functionally broad network of traits.

CONCLUSIONS

Our study identified a suite of flight-associated genes in spongy moths suited to exploration of the genetic architecture and evolution of flight, or validation for flight profiling purposes. This work illustrates how complementary genetic approaches combined with phenotypically targeted functional analyses can help to characterize genetically complex traits.

摘要

背景

飞行可以极大地增强扩散能力,是外来昆虫物种传播和入侵新栖息地的潜在能力的关键特征。植食性欧洲透翅蛾(ESM,Lymantria dispar dispar)和亚洲透翅蛾(ASM;在这里由 L. d. asiatica 和 L. d. japonica 代表的多物种组)是全球性入侵物种,其成虫飞行能力不同——ASM 的雌性通常具有飞行能力,而 ESM 的雌性通常不具有飞行能力。飞行能力的遗传标记将为这些物种在任何截获的生命阶段进行飞行特征分析提供强大的工具。为了评估透翅蛾飞行的功能复杂性并确定潜在的飞行能力标记,我们使用了多种遗传方法,旨在捕获 ESM 和 ASM 之间潜在与飞行相关的遗传分歧的互补信号:简化基因组关联研究、全基因组序列比较和发育转录组学。然后,我们通过旨在解决飞行的直接需求和透翅蛾飞行进化生态背景的显著特征的功能分析来判断与飞行相关的基因的候选资格。

结果

候选基因集通常在不同的遗传方法之间没有重叠,任何两种方法之间只有九个基因注释共享。我们在基因集中检测到一系列与飞行相关的功能主题,这些主题共同表明,欧洲和亚洲透翅蛾谱系之间的飞行能力分化与飞行发育、执行和周围生活史的多个方面的进化分化同时发生。总的来说,我们的结果表明,透翅蛾的飞行进化塑造了或受到了一个庞大而具有广泛功能的性状网络的影响。

结论

我们的研究在透翅蛾中确定了一套与飞行相关的基因,这些基因适合于探索飞行的遗传结构和进化,或用于飞行特征分析的验证。这项工作说明了如何结合互补的遗传方法和针对表型的功能分析来帮助描述遗传复杂的性状。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8630/11140922/da6238040850/12864_2023_9936_Fig1_HTML.jpg

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