Raschka Tamara, Li Zexin, Gaßner Heiko, Kohl Zacharias, Jukic Jelena, Marxreiter Franz, Fröhlich Holger
Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53757 Sankt Augustin, Germany.
Bonn-Aachen International Center for IT, University of Bonn, Friedrich-Hirzebruch-Allee 6, 53115 Bonn, Germany.
EPMA J. 2024 May 28;15(2):275-287. doi: 10.1007/s13167-024-00368-2. eCollection 2024 Jun.
Huntington's disease (HD) is a progressive neurodegenerative disease caused by a CAG trinucleotide expansion in the huntingtin gene. The length of the CAG repeat is inversely correlated with disease onset. HD is characterized by hyperkinetic movement disorder, psychiatric symptoms, and cognitive deficits, which greatly impact patient's quality of life. Despite this clear genetic course, high variability of HD patients' symptoms can be observed. Current clinical diagnosis of HD solely relies on the presence of motor signs, disregarding the other important aspects of the disease. By incorporating a broader approach that encompasses motor as well as non-motor aspects of HD, predictive, preventive, and personalized (3P) medicine can enhance diagnostic accuracy and improve patient care.
Multisymptom disease trajectories of HD patients collected from the Enroll-HD study were first aligned on a common disease timescale to account for heterogeneity in disease symptom onset and diagnosis. Following this, the aligned disease trajectories were clustered using the previously published Variational Deep Embedding with Recurrence (VaDER) algorithm and resulting progression subtypes were clinically characterized. Lastly, an AI/ML model was learned to predict the progression subtype from only first visit data or with data from additional follow-up visits.
Results demonstrate two distinct subtypes, one large cluster ( = 7122) showing a relative stable disease progression and a second, smaller cluster ( = 411) showing a dramatically more progressive disease trajectory. Clinical characterization of the two subtypes correlates with CAG repeat length, as well as several neurobehavioral, psychiatric, and cognitive scores. In fact, cognitive impairment was found to be the major difference between the two subtypes. Additionally, a prognostic model shows the ability to predict HD subtypes from patients' first visit only.
In summary, this study aims towards the paradigm shift from reactive to preventive and personalized medicine by showing that non-motor symptoms are of vital importance for predicting and categorizing each patients' disease progression pattern, as cognitive decline is oftentimes more reflective of HD progression than its motor aspects. Considering these aspects while counseling and therapy definition will personalize each individuals' treatment. The ability to provide patients with an objective assessment of their disease progression and thus a perspective for their life with HD is the key to improving their quality of life. By conducting additional analysis on biological data from both subtypes, it is possible to gain a deeper understanding of these subtypes and uncover the underlying biological factors of the disease. This greatly aligns with the goal of shifting towards 3P medicine.
The online version contains supplementary material available at 10.1007/s13167-024-00368-2.
亨廷顿舞蹈症(HD)是一种由亨廷顿基因中CAG三核苷酸重复序列扩增引起的进行性神经退行性疾病。CAG重复序列的长度与疾病发作呈负相关。HD的特征是运动功能亢进性运动障碍、精神症状和认知缺陷,这些极大地影响了患者的生活质量。尽管有明确的遗传病因,但仍可观察到HD患者症状的高度变异性。目前HD的临床诊断仅依赖于运动体征的存在,而忽略了疾病的其他重要方面。通过采用一种更广泛的方法,涵盖HD的运动和非运动方面,预测性、预防性和个性化(3P)医学可以提高诊断准确性并改善患者护理。
从Enroll-HD研究中收集的HD患者的多症状疾病轨迹首先在一个共同的疾病时间尺度上进行对齐,以考虑疾病症状发作和诊断的异质性。在此之后,使用先前发表的带递归的变分深度嵌入(VaDER)算法对对齐后的疾病轨迹进行聚类,并对所得的进展亚型进行临床特征描述。最后,学习一个人工智能/机器学习模型,仅根据首次就诊数据或额外随访数据来预测进展亚型。
结果显示出两种不同的亚型,一个大的聚类(n = 7122)显示出相对稳定的疾病进展,另一个较小的聚类(n = 411)显示出明显更具进展性的疾病轨迹。这两种亚型的临床特征与CAG重复序列长度以及几个神经行为、精神和认知评分相关。事实上,发现认知障碍是这两种亚型之间的主要差异。此外,一个预后模型显示了仅根据患者首次就诊就能预测HD亚型的能力。
总之,本研究旨在实现从反应性医学向预防性和个性化医学的范式转变,通过表明非运动症状对于预测和分类每个患者的疾病进展模式至关重要,因为认知衰退通常比运动方面更能反映HD的进展。在咨询和确定治疗方案时考虑这些方面将使每个个体的治疗个性化。能够为患者提供对其疾病进展的客观评估,从而为他们患HD的生活提供一个前景,是提高他们生活质量的关键。通过对两种亚型的生物学数据进行额外分析,有可能更深入地了解这些亚型并揭示疾病的潜在生物学因素。这与向3P医学转变的目标高度一致。
在线版本包含可在10.1007/s13167-024-00368-2获取的补充材料。