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基于消减蛋白质组学的疫苗靶点注释及反向疫苗学方法以鉴定针对……的多表位疫苗

Subtractive proteomics-based vaccine targets annotation and reverse vaccinology approaches to identify multiepitope vaccine against .

作者信息

Rasool Danish, Jan Sohail Ahmad, Khan Sumra Umer, Nahid Nazia, Ashfaq Usman Ali, Umar Ahitsham, Qasim Muhammad, Noor Fatima, Rehman Abdur, Shahzadi Kiran, Alshammari Abdulrahman, Alharbi Metab, Nisar Muhammad Atif

机构信息

Department of Bioinformatics and Biosciences, Capital University of Science and Technology, Islamabad, 44000, Pakistan.

Multan Medical and Dental College Multan, Pakistan.

出版信息

Heliyon. 2024 May 22;10(11):e31304. doi: 10.1016/j.heliyon.2024.e31304. eCollection 2024 Jun 15.

Abstract

, an aquatic bacterium belonging to the Enterobacteriaceae family, is a frequent cause of gastroenteritis with diarrhea and gastrointestinal severe disease. Despite decades of research, discovering a licensed and globally accessible vaccine is still years away. Developing a putative vaccine that can combat the infection by boosting population immunity against is direly needed. In the framework of the current study, the entire proteome of was explored using subtractive genomics integrated with the immunoinformatics approach for designing an effective vaccine construct against . The overall stability of the vaccine construct was evaluated using molecular docking, which demonstrated that MEV showed higher binding affinities with toll-like receptors (TLR4: 51.5 ± 10.3, TLR2: 60.5 ± 9.2) and MHC receptors(MHCI: 79.7 ± 11.2 kcal/mol, MHCII: 70.4 ± 23.7). Further, the therapeutic efficacy of the vaccine construct for generating an efficient immune response was evaluated by computational immunological simulation. Finally, computer-based cloning and improvement in codon composition without altering amino acid sequence led to the development of a proposed vaccine. In a nutshell, the findings of this study add to the existing knowledge about the pathogenesis of this infection. The schemed MEV can be a possible prophylactic agent for individuals infected with . Nevertheless, further authentication is required to guarantee its safeness and immunogenic potential.

摘要

[细菌名称]是一种属于肠杆菌科的水生细菌,是导致伴有腹泻的肠胃炎和胃肠道严重疾病的常见病因。尽管经过了数十年的研究,但距离发现一种获得许可且全球可及的疫苗仍有几年时间。迫切需要开发一种能够通过增强人群对[细菌名称]的免疫力来对抗该感染的推定疫苗。在本研究框架内,利用消减基因组学结合免疫信息学方法探索了[细菌名称]的全蛋白质组,以设计一种针对[细菌名称]的有效疫苗构建体。使用分子对接评估了疫苗构建体的整体稳定性,结果表明MEV与Toll样受体(TLR4:51.5±10.3,TLR2:60.5±9.2)和MHC受体(MHCI:79.7±11.2千卡/摩尔,MHCII:70.4±23.7)显示出更高的结合亲和力。此外,通过计算免疫模拟评估了疫苗构建体产生有效免疫反应的治疗效果。最后,基于计算机的克隆和在不改变氨基酸序列的情况下对密码子组成的改进导致了一种提议疫苗的开发。简而言之,本研究的结果增加了关于这种感染发病机制的现有知识。所设计的MEV可能是感染[细菌名称]个体的一种可能的预防剂。然而,需要进一步验证以确保其安全性和免疫原性潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bcd9/11153098/0e7fce64dfdd/gr1.jpg

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