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基于整合生物信息学分析的颅咽管瘤和 2 型糖尿病相关通路和共同生物标志物的研究。

Exploration of the shared pathways and common biomarker in adamantinomatous craniopharyngioma and type 2 diabetes using integrated bioinformatics analysis.

机构信息

Department of Organ and Tissue Anatomy, Hamamatsu University School of Medicine, Hamamatsu, Japan.

Neurosurgery, The First Hospital of China Medical University, Shenyang, China.

出版信息

PLoS One. 2024 Jun 7;19(6):e0304404. doi: 10.1371/journal.pone.0304404. eCollection 2024.

Abstract

Craniopharyngiomas are rare tumors of the central nervous system that typically present with symptoms such as headache and visual impairment, and those reflecting endocrine abnormalities, which seriously affect the quality of life of patients. Patients with craniopharyngiomas are at higher cardiometabolic risk, defined as conditions favoring the development of type 2 diabetes and cardiovascular disease. However, the underlying common pathogenic mechanisms of craniopharyngiomas and type 2 diabetes are not clear. Especially due to the difficulty of conducting in vitro or in vivo experiments on craniopharyngioma, we thought the common pathway analysis between craniopharyngioma and type 2 diabetes based on bioinformatics is a powerful and feasible method. In the present study, using public datasets (GSE94349, GSE68015, GSE38642 and GSE41762) obtained from the GEO database, the gene expression associated with adamantinomatous craniopharyngioma, a subtype of craniopharyngioma, and type 2 diabetes were analyzed using a bioinformatic approach. We found 11 hub genes using a protein-protein interaction network analysis. Of these, seven (DKK1, MMP12, KRT14, PLAU, WNT5B, IKBKB, and FGF19) were also identified by least absolute shrinkage and selection operator analysis. Finally, single-gene validation and receptor operating characteristic analysis revealed that four of these genes (MMP12, PLAU, KRT14, and DKK1) may be involved in the common pathogenetic mechanism of adamantinomatous craniopharyngioma and type 2 diabetes. In addition, we have characterized the differences in immune cell infiltration that characterize these two diseases, providing a reference for further research.

摘要

颅咽管瘤是一种罕见的中枢神经系统肿瘤,通常表现为头痛和视力障碍等症状,以及反映内分泌异常的症状,严重影响患者的生活质量。颅咽管瘤患者存在更高的心脏代谢风险,即易患 2 型糖尿病和心血管疾病的条件。然而,颅咽管瘤和 2 型糖尿病的潜在共同发病机制尚不清楚。特别是由于在颅咽管瘤的体外或体内实验较为困难,我们认为基于生物信息学的颅咽管瘤和 2 型糖尿病之间的共同通路分析是一种强大且可行的方法。在本研究中,我们使用来自 GEO 数据库的公共数据集(GSE94349、GSE68015、GSE38642 和 GSE41762),通过生物信息学方法分析与颅咽管瘤(一种颅咽管瘤亚型)和 2 型糖尿病相关的基因表达。我们通过蛋白质-蛋白质相互作用网络分析发现了 11 个枢纽基因。其中,有 7 个(DKK1、MMP12、KRT14、PLAU、WNT5B、IKBKB 和 FGF19)也通过最小绝对收缩和选择算子分析确定。最后,单基因验证和受体工作特征分析表明,这 4 个基因(MMP12、PLAU、KRT14 和 DKK1)可能参与了颅咽管瘤和 2 型糖尿病的共同发病机制。此外,我们还对这两种疾病的免疫细胞浸润差异进行了特征描述,为进一步研究提供了参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ed7/11161051/575bb6611253/pone.0304404.g001.jpg

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