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整合泛基因组和反向疫苗学以设计针对单纯疱疹病毒1型的多表位疫苗。

Integrating pan-genome and reverse vaccinology to design multi-epitope vaccine against Herpes simplex virus type-1.

作者信息

Roy Aditi, Swetha Rayapadi G, Basu Soumya, Biswas Rhitam, Ramaiah Sudha, Anbarasu Anand

机构信息

Medical and Biological Computing Laboratory, School of Biosciences and Technology (SBST), Vellore Institute of Technology (VIT), Vellore, Tamil Nadu 632014 India.

Department of Biotechnology, SBST, VIT, Vellore, Tamil Nadu 632014 India.

出版信息

3 Biotech. 2024 Jul;14(7):176. doi: 10.1007/s13205-024-04022-6. Epub 2024 Jun 5.


DOI:10.1007/s13205-024-04022-6
PMID:38855144
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11153438/
Abstract

UNLABELLED: Herpes simplex virus type-1 (HSV-1), the etiological agent of sporadic encephalitis and recurring oral (sometimes genital) infections in humans, affects millions each year. The evolving viral genome reduces susceptibility to existing antivirals and, thus, necessitates new therapeutic strategies. Immunoinformatics strategies have shown promise in designing novel vaccine candidates in the absence of a clinically licensed vaccine to prevent HSV-1. However, to encourage clinical translation, the HSV-1 pan-genome was integrated with the reverse-vaccinology pipeline for rigorous screening of universal vaccine candidates. Viral targets were screened from 104 available complete genomes. Among 364 proteins, envelope glycoprotein D being an outer membrane protein with a high antigenicity score (> 0.4) and solubility (> 0.6) was selected for epitope screening. A total of 17 T-cell and 4 B-cell epitopes with highly antigenic, immunogenic, non-toxic properties and high global population coverage were identified. Furthermore, 8 vaccine constructs were designed using different combinations of epitopes and suitable linkers. VC-8 was identified as the most potential vaccine candidate regarding chemical and structural stability. Molecular docking revealed high interactive affinity (low binding energy: - 56.25 kcal/mol) of VC-8 with the target elicited by firm intermolecular H-bonds, salt-bridges, and hydrophobic interactions, which was validated with simulations. Compatibility of the vaccine candidate to be expressed in pET-29(a) + plasmid was established by in silico cloning studies. Immune simulations confirmed the potential of VC-8 to trigger robust B-cell, T-cell, cytokine, and antibody-mediated responses, thereby suggesting a promising candidate for the future of HSV-1 prevention. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s13205-024-04022-6.

摘要

未标记:单纯疱疹病毒1型(HSV-1)是人类散发性脑炎以及复发性口腔(有时为生殖器)感染的病原体,每年影响数百万人。不断演变的病毒基因组降低了对现有抗病毒药物的敏感性,因此需要新的治疗策略。在缺乏临床许可疫苗来预防HSV-1的情况下,免疫信息学策略在设计新型候选疫苗方面显示出了前景。然而,为了促进临床转化,将HSV-1全基因组与反向疫苗学流程相结合,以严格筛选通用候选疫苗。从104个可用的完整基因组中筛选病毒靶点。在364种蛋白质中,包膜糖蛋白D作为一种外膜蛋白,具有高抗原性评分(>0.4)和溶解性(>0.6),被选用于表位筛选。共鉴定出17个具有高抗原性、免疫原性、无毒特性且全球人群覆盖率高的T细胞表位和4个B细胞表位。此外,使用表位和合适连接子的不同组合设计了8种疫苗构建体。VC-8被确定为在化学和结构稳定性方面最具潜力的候选疫苗。分子对接显示VC-8与靶点具有高相互作用亲和力(低结合能:-56.25千卡/摩尔),由牢固的分子间氢键、盐桥和疏水相互作用引发,这通过模拟得到了验证。通过计算机克隆研究确定了候选疫苗在pET-29(a)+质粒中表达的兼容性。免疫模拟证实了VC-8触发强大的B细胞、T细胞、细胞因子和抗体介导反应的潜力,从而表明其是未来预防HSV-1的一个有前景的候选疫苗。 补充信息:在线版本包含可在10.1007/s13205-024-04022-6获取的补充材料。

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[2]
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[3]
The expression and function of HSV ICP47 and its promoter in mice.

J Virol. 2023-11-30

[4]
Computational design of a multi-epitope vaccine candidate against Langya henipavirus using surface proteins.

J Biomol Struct Dyn. 2024

[5]
Pan-genome and reverse vaccinology approaches to design multi-epitope vaccine against Epstein-Barr virus associated with colorectal cancer.

Immunol Res. 2023-12

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In silico design and immunoinformatics analysis of a universal multi-epitope vaccine against monkeypox virus.

PLoS One. 2023

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Targeted Protein-Specific Multi-Epitope-Based Vaccine Designing against Human Cytomegalovirus by Using Immunoinformatics Approaches.

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Multi-target approach against SARS-CoV-2 by stone apple molecules: A master key to drug design.

Phytother Res. 2024-1

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