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MakeSBML:一种用于在锑(Antimony)和系统生物学标记语言(SBML)之间进行转换的工具。

MakeSBML: a tool for converting between Antimony and SBML.

作者信息

Jardine Bartholomew E, Smith Lucian P, Sauro Herbert M

机构信息

Department of Bioengineering, University of Washington, Box 355061, Seattle, 98195, WA, USA.

出版信息

J Integr Bioinform. 2024 Jun 11;21(1). doi: 10.1515/jib-2024-0002. eCollection 2024 Mar 1.

Abstract

We describe a web-based tool, MakeSBML (https://sys-bio.github.io/makesbml/), that provides an installation-free application for creating, editing, and searching the Biomodels repository for SBML-based models. MakeSBML is a client-based web application that translates models expressed in human-readable Antimony to the System Biology Markup Language (SBML) and vice-versa. Since MakeSBML is a web-based application it requires no installation on the user's part. Currently, MakeSBML is hosted on a GitHub page where the client-based design makes it trivial to move to other hosts. This model for software deployment also reduces maintenance costs since an active server is not required. The SBML modeling language is often used in systems biology research to describe complex biochemical networks and makes reproducing models much easier. However, SBML is designed to be computer-readable, not human-readable. We therefore employ the human-readable Antimony language to make it easy to create and edit SBML models.

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2b3/11294515/e66b4ad879f4/j_jib-2024-0002_fig_001.jpg

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