[内质网应激相关基因在主动脉夹层中的差异表达及其与免疫细胞浸润的相关性]
[Differential expressions of endoplasmic reticulum stress-associated genes in aortic dissection and their correlation with immune cell infiltration].
作者信息
Zhou W, Nie J, Hu J, Jiang Y, Zhang D
机构信息
Department of Cardiothoracic Surgery, First Affiliated Hospital of Wannan Medical College, Wuhu 241002, China.
Department of Neurology, First Affiliated Hospital of Wannan Medical College, Wuhu 241002, China.
出版信息
Nan Fang Yi Ke Da Xue Xue Bao. 2024 May 20;44(5):859-866. doi: 10.12122/j.issn.1673-4254.2024.05.07.
OBJECTIVE
To explore differentially expressed endoplasmic reticulum stress-associated genes (ERSAGs) in aortic dissection (AD) and their correlations with immune cell infiltration to identify new therapeutic targets for AD.
METHODS
Two AD mRNA expression datasets (GSE190635 and GSE98770) were downloaded from GEO database for analysis of differentially expressed genes between the aorta of AD patients and normal aorta using R software. ERSAGs dataset was downloaded from GeneCards website, and GeneMANIA database was used to analyze the protein-protein interaction network of the differentially expressed ERSAGs and the proteins interacting with these genes. Based on GSE98770 dataset we analyzed the distributions of 22 immune cells within the aortic wall of AD patients using CIBERSORT package of R software. Surgical aortic wall specimens were obtained from 10 AD patients and 10 non-AD patients for detecting mRNA expression using qRTPCR, and the upstream transcriptional factors, miRNAs, and chemicals targeting were analyzed using the TRRUST database and NetworkAnalyst database.
RESULTS
Bioinformatic analysis suggested significant differential expression of in AD, which interacted with 20 proteins involved in pattern recognition receptor signaling pathway, positive regulation of DNA-binding transcription factor activity, myeloid leukocyte migration, leukocyte migration, and regulation of the I-κB kinase/NF-κB signaling. In AD, AGER expression level was positively correlated with Treg cell abundance (=0.59, < 0.05). The results of qRT-PCR demonstrated significantly lower expression of mRNA in AD than in non-AD patients (1.00±0.30 1.76±0.68, < 0.05). ROC curve analysis showed that at the cut-off value of 1.335, AGER had an AUC of 0.86 (95% : 0.67-1.00, = 0.0073) for predicting AD. Three transcriptional factors, 3 miRNAs, and 27 chemicals were predicted in the AGER regulatory network.
CONCLUSION
is lowly expressed in the aorta of AD patients and may influence the occurrence of AD through Treg cells.
目的
探讨主动脉夹层(AD)中内质网应激相关基因(ERSAGs)的差异表达及其与免疫细胞浸润的相关性,以确定AD的新治疗靶点。
方法
从GEO数据库下载两个AD mRNA表达数据集(GSE190635和GSE98770),使用R软件分析AD患者主动脉与正常主动脉之间的差异表达基因。从GeneCards网站下载ERSAGs数据集,并使用GeneMANIA数据库分析差异表达的ERSAGs及其相互作用蛋白的蛋白质-蛋白质相互作用网络。基于GSE98770数据集,使用R软件的CIBERSORT软件包分析AD患者主动脉壁内22种免疫细胞的分布。从10例AD患者和10例非AD患者获取手术主动脉壁标本,采用qRTPCR检测mRNA表达,并使用TRRUST数据库和NetworkAnalyst数据库分析靶向的上游转录因子、miRNA和化学物质。
结果
生物信息学分析表明AD中存在显著差异表达,其与参与模式识别受体信号通路、DNA结合转录因子活性的正调控、髓系白细胞迁移、白细胞迁移以及I-κB激酶/NF-κB信号调控的20种蛋白质相互作用。在AD中,AGER表达水平与Treg细胞丰度呈正相关(r = 0.59,P < 0.05)。qRT-PCR结果显示,AD患者中mRNA表达明显低于非AD患者(1.00±0.30 vs 1.76±0.68,P < 0.05)。ROC曲线分析表明,在截断值为1.335时,AGER预测AD的AUC为0.86(95%CI:0.67-1.00,P = 0.0073)。在AGER调控网络中预测到3个转录因子、3个miRNA和27种化学物质。
结论
AGER在AD患者主动脉中低表达,可能通过Treg细胞影响AD的发生。