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基于图神经网络和分子静电势表面的硝苯地平共晶预测。

Cocrystal Prediction of Nifedipine Based on the Graph Neural Network and Molecular Electrostatic Potential Surface.

机构信息

Chongqing Key Laboratory of Digitalization of Pharmaceutical Processes and Equipment, College of Chemistry and Chemical Engineering, Chongqing University of Science and Technology, No. 20, University City East Road, Chongqing, 401331, China.

出版信息

AAPS PharmSciTech. 2024 Jun 11;25(5):133. doi: 10.1208/s12249-024-02846-2.

DOI:10.1208/s12249-024-02846-2
PMID:38862767
Abstract

Nifedipine (NIF) is a dihydropyridine calcium channel blocker primarily used to treat conditions such as hypertension and angina. However, its low solubility and low bioavailability limit its effectiveness in clinical practice. Here, we developed a cocrystal prediction model based on Graph Neural Networks (CocrystalGNN) for the screening of cocrystals with NIF. And scoring 50 coformers using CocrystalGNN. To validate the reliability of the model, we used another prediction method, Molecular Electrostatic Potential Surface (MEPS), to verify the prediction results. Subsequently, we performed a second validation using experiments. The results indicate that our model achieved high performance. Ultimately, cocrystals of NIF were successfully obtained and all cocrystals exhibited better solubility and dissolution characteristics compared to the parent drug. This study lays a solid foundation for combining virtual prediction with experimental screening to discover novel water-insoluble drug cocrystals.

摘要

硝苯地平(NIF)是一种二氢吡啶钙通道阻滞剂,主要用于治疗高血压和心绞痛等疾病。然而,其低溶解度和低生物利用度限制了其在临床实践中的效果。在这里,我们开发了一种基于图神经网络(CocrystalGNN)的共晶预测模型,用于筛选与 NIF 的共晶。并使用 CocrystalGNN 对 50 个共晶物进行评分。为了验证模型的可靠性,我们使用另一种预测方法,分子静电势表面(MEPS),来验证预测结果。随后,我们进行了第二次实验验证。结果表明,我们的模型表现出了很高的性能。最终,成功获得了 NIF 的共晶,并且所有共晶都表现出了比母体药物更好的溶解度和溶解特性。这项研究为将虚拟预测与实验筛选相结合,发现新型水不溶性药物共晶奠定了坚实的基础。

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Pharmaceutics. 2023 Aug 26;15(9):2211. doi: 10.3390/pharmaceutics15092211.
2
Combining machine learning and molecular simulations to predict the stability of amorphous drugs.结合机器学习和分子模拟预测无定形药物的稳定性。
J Chem Phys. 2023 Jul 7;159(1). doi: 10.1063/5.0156222.
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Domain-adaptive message passing graph neural network.域自适应消息传递图神经网络。
Neural Netw. 2023 Jul;164:439-454. doi: 10.1016/j.neunet.2023.04.038. Epub 2023 May 3.
4
General Graph Neural Network-Based Model To Accurately Predict Cocrystal Density and Insight from Data Quality and Feature Representation.基于广义图神经网络的模型,可准确预测共晶密度,并从数据质量和特征表示中获得深入见解。
J Chem Inf Model. 2023 Feb 27;63(4):1143-1156. doi: 10.1021/acs.jcim.2c01538. Epub 2023 Feb 3.
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Cocrystal Prediction of Bexarotene by Graph Convolution Network and Bioavailability Improvement.利用图卷积网络预测贝沙罗汀共晶体并改善其生物利用度
Pharmaceutics. 2022 Oct 16;14(10):2198. doi: 10.3390/pharmaceutics14102198.
6
Crystal Engineering of Pharmaceutical Cocrystals in the Discovery and Development of Improved Drugs.药物共晶的晶体工程在改进药物的发现与开发中的应用
Chem Rev. 2022 Jul 13;122(13):11514-11603. doi: 10.1021/acs.chemrev.1c00987. Epub 2022 Jun 1.
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Simultaneous Improvement of Dissolution Behavior and Oral Bioavailability of Antifungal Miconazole via Cocrystal and Salt Formation.通过共晶和盐形成同时改善抗真菌药咪康唑的溶出行为和口服生物利用度。
Pharmaceutics. 2022 May 22;14(5):1107. doi: 10.3390/pharmaceutics14051107.
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Crystal engineering of valproic acid and carbamazepine to improve hygroscopicity and dissolution profile.丙戊酸和卡马西平的晶体工程改善吸湿性和溶解特性。
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Crystallization kinetics and molecular dynamics of binary coamorphous systems of nimesulide and profen analogs.尼美舒利与普洛昔康类似物二元共无定形系统的结晶动力学和分子动力学。
Int J Pharm. 2021 Dec 15;610:121235. doi: 10.1016/j.ijpharm.2021.121235. Epub 2021 Oct 28.
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