Department of Life Sciences, University of Bath, Bath, UK.
Centre for Therapeutic Innovation, University of Bath, Bath, UK.
Br J Clin Pharmacol. 2024 Sep;90(9):2236-2255. doi: 10.1111/bcp.16123. Epub 2024 Jun 11.
This study evaluated the use of machine learning to leverage drug absorption, distribution, metabolism and excretion (ADME) data together with physicochemical and pharmacological data to develop a novel anticholinergic burden scale and compare its performance to previously published scales.
Experimental and in silico ADME, physicochemical and pharmacological data were collected for antimuscarinic activity, blood-brain barrier penetration, bioavailability, chemical structure and P-glycoprotein (P-gp) substrate profile. These five drug properties were used to train an unsupervised model to assign anticholinergic burden scores to drugs. The model performance was evaluated through 10-fold cross-validation and compared with the clinical Anticholinergic Cognitive Burden (ACB) scale and nonclinical Anticholinergic Toxicity Scores (ATS) scale, which is based primarily on muscarinic binding affinity.
In silico software (ADMET Predictor) used for screening drugs for their blood-brain barrier (BBB) penetration correctly identified some drugs that do not cross the BBB. The mean area under the curve for the unsupervised and ACB scale based on the five selected variables was 0.76 and 0.64, respectively. The unsupervised model agreed with the ACB scale on the classification of more than half of the drugs (49 of 88) agreed on the classification of less than half the drugs in the ATS scale (12 of 25).
Our findings suggest that the commonly used ACB scale may misclassify certain drugs due to their inability to cross the BBB. By contrast, the ATS scale would misclassify drugs solely depending on muscarinic binding affinity without considering other drug properties. Machine learning models can be trained on these features to build classification models that are easy to update and have greater generalizability.
本研究评估了机器学习在药物吸收、分布、代谢和排泄(ADME)数据与理化和药理学数据相结合方面的应用,以开发新的抗胆碱能负担量表,并将其性能与先前发表的量表进行比较。
收集了抗毒蕈碱活性、血脑屏障穿透性、生物利用度、化学结构和 P-糖蛋白(P-gp)底物特征的实验和计算 ADME、理化和药理学数据。这五个药物特性用于训练无监督模型,为药物分配抗胆碱能负担评分。通过 10 倍交叉验证评估模型性能,并与临床抗胆碱能认知负担(ACB)量表和主要基于毒蕈碱结合亲和力的非临床抗胆碱能毒性评分(ATS)量表进行比较。
用于筛选血脑屏障(BBB)穿透性药物的计算机软件(ADMET Predictor)正确识别了一些不能穿透 BBB 的药物。基于五个选定变量的无监督和 ACB 量表的平均曲线下面积分别为 0.76 和 0.64。无监督模型与 ACB 量表在超过一半(49 种中的 49 种)药物的分类上达成一致,而在 ATS 量表(25 种中的 12 种)中则达成不到一半药物的分类一致。
我们的研究结果表明,由于不能穿透 BBB,常用的 ACB 量表可能会错误分类某些药物。相比之下,ATS 量表仅根据毒蕈碱结合亲和力而不考虑其他药物特性对药物进行分类。可以基于这些特征训练机器学习模型,以构建易于更新且具有更强泛化能力的分类模型。