能够降解木质素并氧化锰（II）的海洋细菌XK-1菌株的基因组草图
Draft genome of sp. XK-1, a marine bacterium capable of degrading lignin and Mn(II) oxidation.
作者信息
Wang Xukang, Pan Haixia, Zhou Hao, Feng Zhongqing, Li Ang, Guan Xiaoyan
机构信息
Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Chemical Engineering, Ocean and Life Sciences, Panjin Campus, Dalian University of Technology, Panjin, China.
State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, China.
出版信息
Microbiol Resour Announc. 2024 Jul 18;13(7):e0041124. doi: 10.1128/mra.00411-24. Epub 2024 Jun 12.
Abstract
We report the draft genome sequence of marine bacteria, sp. XK-1. Strain XK-1 could facilitate Mn(II) oxidation with lignin as the sole carbon source. The genome length of XK-1 is 4,751,776 bp, with a G + C content of 62.61%. Genome analyses reveal the carbon and manganese cycling driven by bacteria.
摘要
我们报告了海洋细菌XK-1菌株的基因组序列草图。菌株XK-1能够以木质素作为唯一碳源促进锰（II）的氧化。XK-1的基因组长度为4,751,776碱基对，G + C含量为62.61%。基因组分析揭示了细菌驱动的碳和锰循环。
相似文献
1
Draft genome of sp. XK-1, a marine bacterium capable of degrading lignin and Mn(II) oxidation.
Microbiol Resour Announc. 2024 Jul 18;13(7):e0041124. doi: 10.1128/mra.00411-24. Epub 2024 Jun 12.
2
Genomic insights into the metabolic potential of a novel lignin-degrading and polyhydroxyalkanoates producing bacterium Pseudomonas sp. Hu109A.
Chemosphere. 2023 Jan;310:136754. doi: 10.1016/j.chemosphere.2022.136754. Epub 2022 Oct 10.
3
Can xenobiotics support the growth of Mn(II)-oxidizing bacteria (MnOB)? A case of phenol-utilizing bacteria Pseudomonas sp. AN-1.
J Hazard Mater. 2024 May 5;469:134095. doi: 10.1016/j.jhazmat.2024.134095. Epub 2024 Mar 20.
4
Isolation, Characterization, and Genomic Analysis of sp. Strain SMT-1, an Efficient Fluorene-Degrading Bacterium.
Evol Bioinform Online. 2019 Apr 15;15:1176934319843518. doi: 10.1177/1176934319843518. eCollection 2019.
5
Complete genome sequence of one novel marine Pseudomonas sp. BSw22131 growing with dimethylsulfoniopropionate (DMSP) as the sole carbon source.
Mar Genomics. 2023 Apr;68:101016. doi: 10.1016/j.margen.2023.101016. Epub 2023 Jan 23.
6
Genome analysis of Pseudomonas sp. OF001 and Rubrivivax sp. A210 suggests multicopper oxidases catalyze manganese oxidation required for cylindrospermopsin transformation.
BMC Genomics. 2021 Jun 22;22(1):464. doi: 10.1186/s12864-021-07766-0.
7
Draft Genome Sequence of the Lignin-Degrading Burkholderia sp. Strain LIG30, Isolated from Wet Tropical Forest Soil.
Genome Announc. 2014 Jun 19;2(3):e00637-14. doi: 10.1128/genomeA.00637-14.
8
Detoxification and metabolism of glyphosate by a Pseudomonas sp. via biogenic manganese oxidation.
J Hazard Mater. 2023 Apr 15;448:130902. doi: 10.1016/j.jhazmat.2023.130902. Epub 2023 Jan 28.
9
Draft Genome Sequence of Pseudomonas sp. Strain LLC-1 (NBRC 111237), Capable of Metabolizing Lignin-Derived Low-Molecular-Weight Compounds.
Genome Announc. 2018 Apr 19;6(16):e00308-18. doi: 10.1128/genomeA.00308-18.
10
Draft Genome Sequence of Petroleum Oil-Degrading Marine Bacterium Pseudomonas taeanensis Strain MS-3, Isolated from a Crude Oil-Contaminated Seashore.
Genome Announc. 2014 Jan 9;2(1):e00818-13. doi: 10.1128/genomeA.00818-13.
本文引用的文献
1
Can xenobiotics support the growth of Mn(II)-oxidizing bacteria (MnOB)? A case of phenol-utilizing bacteria Pseudomonas sp. AN-1.
J Hazard Mater. 2024 May 5;469:134095. doi: 10.1016/j.jhazmat.2024.134095. Epub 2024 Mar 20.
2
The cryptic step in the biogeochemical tellurium (Te) cycle: Indirect elementary Te oxidation mediated by manganese-oxidizing bacteria Bacillus sp. FF-1.
Environ Res. 2023 Dec 1;238(Pt 2):117212. doi: 10.1016/j.envres.2023.117212. Epub 2023 Sep 29.
3
TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes.
Nucleic Acids Res. 2022 Jan 7;50(D1):D801-D807. doi: 10.1093/nar/gkab902.
4
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.
Nat Commun. 2019 May 16;10(1):2182. doi: 10.1038/s41467-019-10210-3.
5
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
6
Portable lysis apparatus for rapid single-step DNA extraction of Bacillus subtilis.
J Appl Microbiol. 2016 Feb;120(2):379-87. doi: 10.1111/jam.13011.
7
Acclimation of a marine microbial consortium for efficient Mn(II) oxidation and manganese containing particle production.
J Hazard Mater. 2016 Mar 5;304:434-40. doi: 10.1016/j.jhazmat.2015.11.019. Epub 2015 Nov 30.
8
Trimmomatic: a flexible trimmer for Illumina sequence data.
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
9
Population structure of manganese-oxidizing bacteria in stratified soils and properties of manganese oxide aggregates under manganese-complex medium enrichment.
PLoS One. 2013 Sep 12;8(9):e73778. doi: 10.1371/journal.pone.0073778. eCollection 2013.
10
De novo assembly of human genomes with massively parallel short read sequencing.
Genome Res. 2010 Feb;20(2):265-72. doi: 10.1101/gr.097261.109. Epub 2009 Dec 17.
Zotero 插件