Radboud university medical center, P.O. Box 9101, 6500HB Nijmegen, The Netherlands.
University of Augsburg, Universitätsstraße 2, 86159 Augsburg, Germany.
Med Image Anal. 2024 Oct;97:103230. doi: 10.1016/j.media.2024.103230. Epub 2024 Jun 5.
Challenges drive the state-of-the-art of automated medical image analysis. The quantity of public training data that they provide can limit the performance of their solutions. Public access to the training methodology for these solutions remains absent. This study implements the Type Three (T3) challenge format, which allows for training solutions on private data and guarantees reusable training methodologies. With T3, challenge organizers train a codebase provided by the participants on sequestered training data. T3 was implemented in the STOIC2021 challenge, with the goal of predicting from a computed tomography (CT) scan whether subjects had a severe COVID-19 infection, defined as intubation or death within one month. STOIC2021 consisted of a Qualification phase, where participants developed challenge solutions using 2000 publicly available CT scans, and a Final phase, where participants submitted their training methodologies with which solutions were trained on CT scans of 9724 subjects. The organizers successfully trained six of the eight Final phase submissions. The submitted codebases for training and running inference were released publicly. The winning solution obtained an area under the receiver operating characteristic curve for discerning between severe and non-severe COVID-19 of 0.815. The Final phase solutions of all finalists improved upon their Qualification phase solutions.
挑战推动了自动化医学图像分析的最新发展。它们提供的公共培训数据的数量限制了其解决方案的性能。公众仍然无法访问这些解决方案的培训方法。本研究实施了第三类 (T3) 挑战格式,允许在私人数据上训练解决方案,并保证可重复使用的培训方法。使用 T3,挑战组织者可以在隔离的训练数据上训练参与者提供的代码库。T3 被用于 2021 年 STOIC 挑战赛,目标是从 CT 扫描中预测受试者是否患有严重的 COVID-19 感染,定义为一个月内需要插管或死亡。STOIC2021 由资格赛阶段组成,参与者使用 2000 张公开的 CT 扫描来开发挑战解决方案,以及决赛阶段,参与者提交他们的培训方法,使用这些方法在 9724 名受试者的 CT 扫描上训练解决方案。组织者成功地训练了最终阶段提交的八项中的六项。用于训练和运行推理的提交代码库被公开发布。获奖解决方案在区分严重和非严重 COVID-19 方面的接收器操作特征曲线下面积为 0.815。所有决赛选手的决赛阶段解决方案都比他们的资格赛阶段解决方案有所改进。