探讨铜稳态相关基因失调在急性髓系白血病中的预后意义和治疗意义,并进行临床验证。

Exploring and clinical validation of prognostic significance and therapeutic implications of copper homeostasis-related gene dysregulation in acute myeloid leukemia.

机构信息

School of Pharmacy, Xinjiang Medical University, Urumqi, 830011, China.

Department of General Medicine, The First Affiliated Hospital of the Xinjiang Medical University, Urumqi, 830011, China.

出版信息

Ann Hematol. 2024 Aug;103(8):2797-2826. doi: 10.1007/s00277-024-05841-6. Epub 2024 Jun 15.

Abstract

The patterns and biological functions of copper homeostasis-related genes (CHRGs) in acute myeloid leukemia (AML) remain unclear. We explored the patterns and biological functions of CHRGs in AML. Using independent cohorts, including TCGA-GTEx, GSE114868, GSE37642, and clinical samples, we identified 826 common differentially expressed genes. Specifically, 12 cuproptosis-related genes (e.g., ATP7A, ATP7B) were upregulated, while 17 cuproplasia-associated genes (e.g., ATOX1, ATP7A) were downregulated in AML. We used LASSO-Cox, Kaplan-Meier, and Nomogram analyses to establish prognostic risk models, effectively stratifying patients with AML into high- and low-risk groups. Subgroup analysis revealed that high-risk patients exhibited poorer overall survival and involvement in fatty acid metabolism, apoptosis, and glycolysis. Immune infiltration analysis indicated differences in immune cell composition, with notable increases in B cells, cytotoxic T cells, and memory T cells in the low-risk group, and increased monocytes and neutrophils in the high-risk group. Single-cell sequencing analysis corroborated the expression characteristics of critical CHRGs, such as MAPK1 and ATOX1, associated with the function of T, B, and NK cells. Drug sensitivity analysis suggested potential therapeutic agents targeting copper homeostasis, including Bicalutamide and Sorafenib. PCR validation confirmed the differential expression of 4 cuproptosis-related genes (LIPT1, SLC31A1, GCSH, and PDHA1) and 9 cuproplasia-associated genes (ATOX1, CCS, CP, MAPK1, SOD1, COA6, PDK1, DBH, and PDE3B) in AML cell line. Importantly, these genes serve as potential biomarkers for patient stratification and treatment. In conclusion, we shed light on the expression patterns and biological functions of CHRGs in AML. The developed risk models provided prognostic implications for patient survival, offering valuable information on the regulatory characteristics of CHRGs and potential avenues for personalized treatment in AML.

摘要

铜稳态相关基因(CHRGs)在急性髓系白血病(AML)中的模式和生物学功能尚不清楚。我们探索了 CHRGs 在 AML 中的模式和生物学功能。使用独立队列,包括 TCGA-GTEx、GSE114868、GSE37642 和临床样本,我们确定了 826 个常见差异表达基因。具体来说,在 AML 中,12 个铜死亡相关基因(例如 ATP7A、ATP7B)上调,而 17 个铜生成相关基因(例如 ATOX1、ATP7A)下调。我们使用 LASSO-Cox、Kaplan-Meier 和列线图分析建立了预后风险模型,有效地将 AML 患者分为高风险和低风险组。亚组分析显示,高风险患者的总体生存率较差,且涉及脂肪酸代谢、细胞凋亡和糖酵解。免疫浸润分析表明免疫细胞组成存在差异,低风险组中 B 细胞、细胞毒性 T 细胞和记忆 T 细胞增加,而高风险组中单核细胞和中性粒细胞增加。单细胞测序分析证实了关键 CHRGs 的表达特征,例如 MAPK1 和 ATOX1,与 T、B 和 NK 细胞的功能相关。药物敏感性分析表明,针对铜稳态的潜在治疗药物包括比卡鲁胺和索拉非尼。PCR 验证证实了 4 个铜死亡相关基因(LIPT1、SLC31A1、GCSH 和 PDHA1)和 9 个铜生成相关基因(ATOX1、CCS、CP、MAPK1、SOD1、COA6、PDK1、DBH 和 PDE3B)在 AML 细胞系中的差异表达。重要的是,这些基因可作为患者分层和治疗的潜在生物标志物。总之,我们揭示了 CHRGs 在 AML 中的表达模式和生物学功能。所开发的风险模型为患者生存提供了预后意义,为 CHRGs 的调控特征和 AML 中个性化治疗的潜在途径提供了有价值的信息。

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