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Comprehensive pan-cancer analysis reveals VSIR as a candidate immunologic, diagnostic, and prognostic biomarker.

作者信息

Pan Jun, Mahsud Ihsanullah, Ul Haq Moeen, Khan Salman, Alhomrani Majid, Alamri Abdulhakeem S, Alghamdi Saleh A, ALSuhaymi Naif, Baothman Bandar K, Almaghrabi Sarah, Ullah Sajid, Jamil Muhammad

机构信息

Department of Thoracic Surgery/Cardiovascular Surgery, The First People's Hospital of Xiaoshan District, Xiaoshan Affiliated Hospital of Wenzhou Medical University Hangzhou 311200, Zhejiang, China.

Medical Department, Gomal Medical College/MTI D.I.Khan, Pakistan.

出版信息

Am J Transl Res. 2024 May 15;16(5):1630-1642. doi: 10.62347/JMBZ8836. eCollection 2024.


DOI:10.62347/JMBZ8836
PMID:38883368
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11170614/
Abstract

OBJECTIVES: Being a checkpoint, the expression level of V-set immunoregulatory receptor (VSIR) serves as an indicator of the extent of immunosuppression. Our objective was to undertake a pan-cancer analysis to examine the expression, genetic alterations, prognosis, and immunologic features associated with VSIR. METHODS: The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression (GTEx), GEPIA2, UALCAN, OncoDB, Human Protein Atlas (HPA), STRING, DAVID, cell culture, clinical sample collection, and reverse transcription quantitative polymerase chain reaction (RT-qPCR) were used. RESULTS: This study comprehensively assessed VSIR across 33 cancers using TCGA and GTEx databases. Differential expression analysis revealed elevated VSIR in several cancers, notably in cholangiocarcinoma, esophageal carcinoma, kidney renal cell carcinoma, and liver hepatocellular carcinoma, while decreased expression was observed in various others. Prognostic analysis highlighted its significant association with reduced overall survival (OS) in ESCA and LIHC. Investigation into cancer stages demonstrated a correlation between VSIR expression and stage in ESCA and LIHC. Promoter methylation analysis indicated decreased VSIR methylation levels in tumors, implicating a role in oncogenesis. Furthermore, subcellular localization predictions, Tumor Mutational Burden (TMB), and Microsatellite Instability (MSI) correlations revealed intriguing insight into VSIR's function. Notably, a positive correlation was identified between VSIR expression and various immune cells in both cancers. Protein-protein interaction (PPI) network construction and gene enrichment analysis elucidated VSIR-associated dysregulated pathways, emphasizing its possible involvement in diverse pathways. Finally, experimental validation using LIHC clinical samples and cell lines confirmed elevated VSIR expression, supporting its oncogenic role. CONCLUSION: Collectively, these findings present a comprehensive understanding of VSIR's diverse roles and potential clinical implications in ESCA and LIHC.

摘要

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本文引用的文献

[1]
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[2]
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[3]
Programmed Cell Death Protein 1 (PD-1) and Programmed Cell Death Ligand 1 (PD-L1) Immunotherapy: A Promising Breakthrough in Cancer Therapeutics.

Cureus. 2023-9-2

[4]
Vista of the Future: Novel Immunotherapy Based on the Human V-Set Immunoregulatory Receptor for Digestive System Tumors.

Int J Mol Sci. 2023-6-9

[5]
The current landscape of CAR T-cell therapy for solid tumors: Mechanisms, research progress, challenges, and counterstrategies.

Front Immunol. 2023

[6]
NGS-based profiling identifies miRNAs and pathways dysregulated in cisplatin-resistant esophageal cancer cells.

Funct Integr Genomics. 2023-3-30

[7]
Identification of CD73 as a Novel Biomarker Encompassing the Tumor Microenvironment, Prognosis, and Therapeutic Responses in Various Cancers.

Cancers (Basel). 2022-11-17

[8]
A protein microarray-based serum proteomic investigation reveals distinct autoantibody signature in colorectal cancer.

Proteomics Clin Appl. 2023-3

[9]
Prognostic significance of programmed death-1 and programmed death ligand-1 proteins in breast cancer.

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[10]
Cancer incidence and mortality in Poland in 2019.

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