Laboratory of Molecular Biology, Vet-Lab Brudzew, 62-720 Brudzew, Poland.
Department of Medical Microbiology, Faculty of Medicine, Medical University of Gdańsk, 80-204 Gdańsk, Poland.
Int J Mol Sci. 2024 May 23;25(11):5664. doi: 10.3390/ijms25115664.
(IIIb) is frequently isolated from reptiles and less frequently from birds and mammals. However, its isolation from invasive human infections has not been widely reported. Migratory mallard ducks are excellent bioindicators of pathogen presence and pathogen antibiotic resistance (AMR). We present the first isolation from a mallard duck in central Europe of the antibiotic-resistant subsp. with the unique antigenic pattern 58:r:z and report its whole-genome sequencing, serosequencing, and genotyping, which enabled the prediction of its pathogenicity and comparison with phenotypic AMR. The isolated strain was highly similar to isolated from humans and food. Twenty-four AMR genes were detected, including those encoding aminoglycoside, fluoroquinolone, macrolide, carbapenem, tetracycline, cephalosporin, nitroimidazole, peptide antibiotic, and disinfecting agent/antiseptic resistance. Six pathogenicity islands were found (SPI-1, SPI-2, SPI-3, SPI-5, SPI-9, and SPI-13). An iron transport system was detected in SPI-1 centisome C63PI. Plasmid profile analyses showed three to be present. Sequence mutations in the and genes were noted, which truncated and elongated the proteins, respectively. The strain also harbored genes encoding type-III secretion-system effector proteins and many virulence factors found in associated with human infections. This study aims to elucidate the AMR and virulence genes in subsp. that may most seriously threaten human health.
(IIIb)通常从爬行动物中分离出来,较少从鸟类和哺乳动物中分离出来。然而,从入侵性人类感染中分离出来的情况尚未得到广泛报道。迁徙的绿头鸭是病原体存在和病原体抗生素耐药性(AMR)的极好生物标志物。我们首次从中欧的一只绿头鸭中分离出具有独特抗原模式 58:r:z 的耐药亚种 ,并报告了其全基因组测序、血清测序和基因分型,这使得我们能够预测其致病性并与表型 AMR 进行比较。分离株与从人类和食物中分离出的 高度相似。检测到 24 个 AMR 基因,包括编码氨基糖苷类、氟喹诺酮类、大环内酯类、碳青霉烯类、四环素类、头孢菌素类、硝基咪唑类、肽类抗生素和消毒剂/防腐剂耐药性的基因。发现了六个 致病性岛(SPI-1、SPI-2、SPI-3、SPI-5、SPI-9 和 SPI-13)。在 centisome C63PI 的 SPI-1 中检测到一个铁转运系统。质粒图谱分析显示存在三个质粒。在 基因和 基因中发现了序列突变,分别截断和延长了蛋白质。该菌株还携带编码 III 型分泌系统效应蛋白的基因和许多与人类感染相关的 中发现的毒力因子。本研究旨在阐明 亚种中可能对人类健康构成最严重威胁的 AMR 和毒力基因。