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2019 - 2021年中国南京某三级医院血流感染相关物种的分子特征

Molecular Characteristics of Spp. Responsible for Bloodstream Infections in a Tertiary Hospital in Nanjing, China, 2019-2021.

作者信息

Hua Miao-Miao, Li Jia, Zheng Jie, Wang Jing-Jing, Liu Chang, Zhang Yan, Zhang Zhi-Feng, Cao Xiao-Li, Shen Han

机构信息

Department of Laboratory Medicine, Nanjing Drum Tower Hospital Clinical College of Jiangsu University, Nanjing, People's Republic of China.

Department of Laboratory Medicine, Nanjing University Medical School Affiliated Nanjing Drum Tower Hospital, Nanjing, People's Republic of China.

出版信息

Infect Drug Resist. 2024 Jun 12;17:2363-2377. doi: 10.2147/IDR.S459941. eCollection 2024.

Abstract

OBJECTIVE

To investigate the clinical and molecular characteristics of spp. causing bloodstream infections (BSIs) in our hospital.

METHODS

We studied 22 clinical isolates from BSIs and 16 from non-BSIs, performing antimicrobial susceptibility testing (AST) and whole genome sequencing (WGS). The analysis included serovars, antibiotic resistance genes (ARGs), virulence factors (VFs), sequence types (STs), plasmid replicons, and genetic relationships. We also assessed pathogenicity of the isolates causing BSIs through growth, biofilm formation, and anti-serum killing assays.

RESULTS

WGS analysis identified 13 serovars, with four responsible for BSIs. was the most prevalent serovar, involved in 19 (50.0%) cases. BSIs were caused by 17. Enteritidis, two . Typhimurium, two . Munster and one . Diguel. Of the 38 isolates, 27 (71.1%) exhibited high resistance to ampicillin, and 24 (63.2%) to ampicillin/sulbactam. Thirty-six types of ARGs were identified, with TEM-1B (n = 25, 65.8%) being the most frequent. Ten plasmid replicons were found; the combination of IncFIB(S)-IncFII(S)-IncX1 was the most common in . Enteritidis (94.7%). Fifteen STs were identified, among which ST11 was the most prevalent and clonally disseminated, primarily responsible for BSIs. A total of 333 different VFs were detected, 177 of which were common across all strains. No significant differences were observed between the BSI and non-BSI isolates in terms of resistance rates, ARGs, plasmid replicons, and VFs, except for seven VFs. No strong pathogenicity was observed in the BSI-causing isolates.

CONCLUSION

BSIs were predominantly caused by clonally disseminated . Enteritidis ST11, the majority of which carried multiple ARGs, VFs and plasmid replicons. This study provides the first data on clonally disseminated . Enteritidis ST11 causing BSIs, highlighting the urgent need for enhanced infection control measures.

摘要

目的

调查我院引起血流感染(BSIs)的[具体菌种名称]的临床和分子特征。

方法

我们研究了22株来自血流感染的临床[具体菌种名称]分离株和16株来自非血流感染的分离株,进行了抗菌药物敏感性试验(AST)和全基因组测序(WGS)。分析包括血清型、抗生素耐药基因(ARGs)、毒力因子(VFs)、序列类型(STs)、质粒复制子和遗传关系。我们还通过生长、生物膜形成和抗血清杀伤试验评估了引起血流感染的分离株的致病性。

结果

WGS分析鉴定出13种血清型,其中4种导致血流感染。[具体血清型名称]是最常见的血清型,涉及19例(50.0%)。血流感染由17株肠炎沙门氏菌、2株[具体血清型名称]、2株鼠伤寒沙门氏菌、2株明斯特沙门氏菌和1株迪盖尔沙门氏菌引起。在38株分离株中,27株(71.1%)对氨苄西林表现出高度耐药,24株(63.2%)对氨苄西林/舒巴坦耐药。鉴定出36种ARGs类型,其中TEM-1B(n = 25,65.8%)最为常见。发现了10种质粒复制子;IncFIB(S)-IncFII(S)-IncX1的组合在肠炎沙门氏菌中最为常见(94.7%)。鉴定出15种STs,其中ST11最为普遍且呈克隆性传播,主要导致血流感染。共检测到333种不同的VFs,其中177种在所有菌株中都有。除了7种VFs外,在血流感染和非血流感染分离株之间,在耐药率、ARGs、质粒复制子和VFs方面未观察到显著差异。在引起血流感染的分离株中未观察到强致病性。

结论

血流感染主要由克隆性传播的肠炎沙门氏菌ST11引起,其中大多数携带多种ARGs、VFs和质粒复制子。本研究提供了关于克隆性传播的肠炎沙门氏菌ST11引起血流感染的首批数据,突出了加强感染控制措施的迫切需求。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5cc7/11182758/21cf5c800749/IDR-17-2363-g0001.jpg

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