Lee April, Davis Joseph H
Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139.
Program in Computational and Systems Biology, Massachusetts Institute of Technology, Cambridge, MA 02139.
bioRxiv. 2024 Jun 9:2024.06.09.597909. doi: 10.1101/2024.06.09.597909.
Cells carefully regulate cytosolic iron, which is a vital enzymatic cofactor, yet is toxic in excess. In mammalian cells, surplus iron is sequestered in ferritin cages that, in iron limiting conditions, are degraded through the selective autophagy pathway ferritinophagy to liberate free iron. Prior work identified the ferritinophagy receptor protein NCOA4, which links ferritin and LC3/GABARAP-family member GATE16, effectively tethering ferritin to the autophagic machinery. Here, we elucidate the molecular mechanism underlying this interaction, discovering two short linear motifs in NCOA4 that each bind GATE16 with weak affinity. These binding motifs are highly avid and, in concert, support high-affinity NCOA4•GATE16 complex formation. We further find the minimal NCOA4 fragment bearing these motifs is sufficient for ferritinophagy and that both motifs are necessary for this activity. This work suggests a general mechanism wherein selective autophagy receptors can distinguish between the inactive soluble pools of LC3/GABARAPs and the active membrane-conjugated forms that drive autophagy. Finally, we find that iron decreases NCOA4's affinity for GATE16, providing a plausible mechanism for iron-dependent regulation of ferritinophagy.
细胞会仔细调节胞质铁,铁是一种至关重要的酶辅因子,但过量时具有毒性。在哺乳动物细胞中,多余的铁被隔离在铁蛋白笼中,在铁限制条件下,铁蛋白笼通过选择性自噬途径——铁蛋白自噬被降解以释放游离铁。先前的研究确定了铁蛋白自噬受体蛋白NCOA4,它将铁蛋白与LC3/GABARAP家族成员GATE16连接起来,有效地将铁蛋白拴系到自噬机制上。在这里,我们阐明了这种相互作用的分子机制,在NCOA4中发现了两个短线性基序,每个基序都以弱亲和力结合GATE16。这些结合基序具有高度的亲和力,共同支持高亲和力的NCOA4•GATE16复合物的形成。我们进一步发现,带有这些基序的最小NCOA4片段足以进行铁蛋白自噬,并且两个基序对于这种活性都是必需的。这项工作提出了一种普遍机制,即选择性自噬受体可以区分LC3/GABARAP的无活性可溶性池和驱动自噬的活性膜结合形式。最后,我们发现铁会降低NCOA4对GATE16的亲和力,为铁蛋白自噬的铁依赖性调节提供了一种合理的机制。