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DNA结合是自然转化的限速步骤。

DNA binding is rate-limiting for natural transformation.

作者信息

Ellison Taylor J, Ellison Courtney K

机构信息

Department of Microbiology, University of Georgia, Athens, GA.

出版信息

bioRxiv. 2024 Jun 6:2024.06.06.597730. doi: 10.1101/2024.06.06.597730.

DOI:10.1101/2024.06.06.597730
PMID:38895488
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11185590/
Abstract

Bacteria take up environmental DNA using dynamic appendages called type IV pili (T4P) to elicit horizontal gene transfer in a process called natural transformation. Natural transformation is widespread amongst bacteria yet determining how different factors universally contribute to or limit this process across species has remained challenging. Here we show that the most naturally transformable species, is highly transformable due to its ability to robustly bind nonspecific DNA via a dedicated orphan minor pilin, FimT. We show that, compared to its homologues, FimT contains multiple positively charged residues that additively promote DNA binding efficiency. Expression of FimT in a closely related pathogen is sufficient to substantially improve its capacity for natural transformation, demonstrating that T4P-DNA binding is a rate-limiting step in this process. These results demonstrate the importance of T4P-DNA binding efficiency in driving natural transformation, establishing a key factor limiting horizontal gene transfer.

摘要

细菌利用称为IV型菌毛(T4P)的动态附属物摄取环境DNA,以在一个称为自然转化的过程中引发水平基因转移。自然转化在细菌中广泛存在,但确定不同因素如何普遍促进或限制跨物种的这一过程仍然具有挑战性。在这里,我们表明,最容易发生自然转化的物种具有高度的转化能力,这是由于它能够通过一种专门的孤儿小菌毛蛋白FimT强有力地结合非特异性DNA。我们表明,与它的同源物相比,FimT含有多个带正电荷的残基,这些残基累加起来促进DNA结合效率。在一种密切相关的病原体中表达FimT足以显著提高其自然转化能力,这表明T4P-DNA结合是这一过程中的限速步骤。这些结果证明了T4P-DNA结合效率在驱动自然转化中的重要性,确立了限制水平基因转移的一个关键因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5e5/11185590/e1c167ea6a67/nihpp-2024.06.06.597730v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5e5/11185590/6429bf2c0b1e/nihpp-2024.06.06.597730v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5e5/11185590/ee6b4a3d1dd2/nihpp-2024.06.06.597730v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5e5/11185590/18d185e9127f/nihpp-2024.06.06.597730v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5e5/11185590/e1c167ea6a67/nihpp-2024.06.06.597730v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5e5/11185590/6429bf2c0b1e/nihpp-2024.06.06.597730v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5e5/11185590/ee6b4a3d1dd2/nihpp-2024.06.06.597730v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5e5/11185590/18d185e9127f/nihpp-2024.06.06.597730v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5e5/11185590/e1c167ea6a67/nihpp-2024.06.06.597730v1-f0004.jpg

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本文引用的文献

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DNA modifications impact natural transformation of Acinetobacter baumannii.DNA 修饰影响鲍曼不动杆菌的自然转化。
Nucleic Acids Res. 2023 Jun 23;51(11):5661-5677. doi: 10.1093/nar/gkad377.
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Subcellular localization of type IV pili regulates bacterial multicellular development.IV 型菌毛的亚细胞定位调控细菌的多细胞发育。
Nat Commun. 2022 Oct 25;13(1):6334. doi: 10.1038/s41467-022-33564-7.
4
The molecular basis of FimT-mediated DNA uptake during bacterial natural transformation.FimT 介导的细菌自然转化过程中 DNA 摄取的分子基础。
Nat Commun. 2022 Mar 4;13(1):1065. doi: 10.1038/s41467-022-28690-1.
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Type IV Pili: dynamic bacterial nanomachines.IV 型菌毛:动态细菌纳米机器。
FEMS Microbiol Rev. 2022 Mar 3;46(2). doi: 10.1093/femsre/fuab053.
6
The minor pilin PilV provides a conserved adhesion site throughout the antigenically variable meningococcal type IV pilus.小菌毛 PilV 为抗原可变的脑膜炎奈瑟菌 IV 型菌毛提供了一个保守的黏附位点。
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Antimicrobial resistance acquisition via natural transformation: context is everything.通过自然转化获得抗菌药物耐药性:背景至关重要。
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The activation and limitation of the bacterial natural transformation system: The function in genome evolution and stability.细菌自然转化系统的激活与限制:其在基因组进化与稳定性中的作用
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