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浮游植物随时间变化的大分子和元素组成模型。

A model of time-dependent macromolecular and elemental composition of phytoplankton.

作者信息

Omta Anne Willem, Liefer Justin D, Finkel Zoe V, Irwin Andrew J, Sher Daniel, Follows Michael J

机构信息

Department of Earth, Environmental, and Planetary Sciences, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106, USA.

Department of Biology, Mount Allison University, 63B York Street, Sackville, E4L 1A5, New Brunswick, Canada.

出版信息

J Theor Biol. 2024 Sep 7;592:111883. doi: 10.1016/j.jtbi.2024.111883. Epub 2024 Jun 20.

Abstract

Phytoplankton Chl:C:N:P ratios are important from both an ecological and a biogeochemical perspective. We show that these elemental ratios can be represented by a phytoplankton physiological model of low complexity that includes major cellular macromolecular pools. In particular, our model resolves time-dependent intracellular pools of chlorophyll, proteins, nucleic acids, carbohydrates/lipids, and N and P storage. Batch culture data for two diatom and two prasinophyte species are used to constrain parameters that represent specific allocation traits and strategies. A key novelty is the simultaneous estimation of physiological parameters for two phytoplankton groups of such different sizes. The number of free parameters is reduced by assuming (i) allometric scaling for maximum uptake rates, (ii) shared half-saturation constants for synthesis of functional macromolecules, (iii) shared exudation rates of functional macromolecules across the species. The rationale behind this assumption is that across the different species, the same or similar processes, enzymes, and metabolites play a role in key physiological processes. For the turnover numbers of macromolecular synthesis and storage exudation rates, differences between diatoms and prasinophytes need to be taken into account to obtain a good fit. Our model fits suggest that the parameters related to storage dynamics dominate the differences in the C:N:P ratios between the different phytoplankton groups. Since descriptions of storage dynamics are still incomplete and imprecise, predictions of C:N:P ratios by phytoplankton models likely have a large uncertainty.

摘要

从生态和生物地球化学角度来看,浮游植物的叶绿素、碳、氮、磷比率都很重要。我们表明,这些元素比率可以用一个低复杂度的浮游植物生理模型来表示,该模型包括主要的细胞大分子库。特别是,我们的模型解析了叶绿素、蛋白质、核酸、碳水化合物/脂质以及氮和磷储存的随时间变化的细胞内库。利用两种硅藻和两种绿藻的分批培养数据来约束代表特定分配特征和策略的参数。一个关键的新颖之处在于同时估计两种大小差异如此之大的浮游植物群体的生理参数。通过假设(i)最大摄取率的异速生长缩放,(ii)功能大分子合成的共享半饱和常数,(iii)跨物种功能大分子的共享渗出率,减少了自由参数的数量。这一假设背后的基本原理是,在不同物种中,相同或相似的过程、酶和代谢物在关键生理过程中发挥作用。对于大分子合成的周转数和储存渗出率,需要考虑硅藻和绿藻之间的差异以获得良好的拟合。我们的模型拟合表明,与储存动态相关的参数主导了不同浮游植物群体之间碳、氮、磷比率的差异。由于对储存动态的描述仍然不完整且不准确,浮游植物模型对碳、氮、磷比率的预测可能存在很大的不确定性。

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