General Practice, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, China.
National-Local Joint Engineering Research Center of Biodiagnosis & Biotherapy, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, China.
Shock. 2024 Sep 1;62(3):363-374. doi: 10.1097/SHK.0000000000002414. Epub 2024 Jun 24.
Sepsis is a life-threatening disease due to a dysregulated host response to infection, with an unknown regulatory mechanism for prognostic necroptosis-related genes (NRGs). Using GEO datasets GSE65682 and GSE134347, we identified six NRG biomarkers ( ATRX , TSC1 , CD40 , BACH2 , BCL2 , and LEF1 ) with survival and diagnostic significance through Kaplan-Meier (KM) and receiver operating characteristic (ROC) analyses. Afterward, the ingenuity pathway analysis (IPA) highlighted enrichment in hepatic fibrosis pathways and BEX2 protein. Moreover, we examined their regulatory targets and functional links with necroptotic signaling molecules via miRDB, TargetScan, Network analyst, and GeneMANIA. The molecular regulatory network displayed that hsa-miR-5195-3p and hsa-miR-145-5p regulated ATRX, BACH2, and CD40, while YY1 showed strong connectivity, concurrently controlling LEF1, ATRX, BCL2, BACH2, and CD40. CD40 exhibited similar expression patterns to RIPK3 and MLKL, and LEF1 was functionally associated with MLKL. Additionally, DrugBank analysis identified paclitaxel, docetaxel, and rasagiline as potential BCL2-targeting sepsis treatments. Finally, real-time quantitative PCR confirmed ATRX, TSC1, and LEF1 downregulation in sepsis samples, contrasting CD40's increased expression in CTL samples. In conclusion, ATRX , TSC1 , CD40 , BACH2 , BCL2 , and LEF1 may be critical regulatory targets of necroptosis in sepsis, providing a basis for further necroptosis-related studies in sepsis.
脓毒症是一种危及生命的疾病,是由于宿主对感染的反应失调引起的,其预后性坏死相关基因(NRGs)的调节机制尚不清楚。我们使用 GEO 数据集 GSE65682 和 GSE134347,通过 Kaplan-Meier(KM)和接收器操作特征(ROC)分析,确定了具有生存和诊断意义的六个 NRG 生物标志物( ATRX 、 TSC1 、 CD40 、 BACH2 、 BCL2 和 LEF1 )。之后,Ingenuity 通路分析(IPA)突出了肝纤维化途径和 BEX2 蛋白的富集。此外,我们通过 miRDB、TargetScan、Network analyst 和 GeneMANIA 检查了它们与坏死信号分子的调节靶点和功能联系。分子调控网络显示, hsa-miR-5195-3p 和 hsa-miR-145-5p 调控 ATRX 、 BACH2 和 CD40,而 YY1 显示出很强的连接性,同时控制 LEF1 、 ATRX 、 BCL2 、 BACH2 和 CD40。CD40 的表达模式与 RIPK3 和 MLKL 相似,LEF1 与 MLKL 具有功能相关性。此外,DrugBank 分析确定紫杉醇、多西他赛和 rasagiline 可能是针对 BCL2 的脓毒症治疗药物。最后,实时定量 PCR 证实脓毒症样本中 ATRX 、 TSC1 和 LEF1 下调,CTL 样本中 CD40 表达增加。综上所述, ATRX 、 TSC1 、 CD40 、 BACH2 、 BCL2 和 LEF1 可能是脓毒症中坏死的关键调控靶点,为脓毒症中进一步的坏死相关研究提供了基础。