不同癌症中PHLDA基因家族的多组学分析及其临床预后价值

Multiomics Analysis of the PHLDA Gene Family in Different Cancers and Their Clinical Prognostic Value.

作者信息

Iqbal Safia, Karim Md Rezaul, Mohammad Shahnawaz, Mathiyalagan Ramya, Morshed Md Niaj, Yang Deok-Chun, Bae Hyocheol, Rupa Esrat Jahan, Yang Dong Uk

机构信息

Department of Biopharmaceutical Biotechnology, College of Life Science, Kyung Hee University, Yongin-si 17104, Gyeonggi-do, Republic of Korea.

Graduate School of Biotechnology, College of Life Science, Kyung Hee University, Yongin-si 17104, Gyeonggi-do, Republic of Korea.

出版信息

Curr Issues Mol Biol. 2024 May 30;46(6):5488-5510. doi: 10.3390/cimb46060328.

Abstract

The PHLDA (pleckstrin homology-like domain family) gene family is popularly known as a potential biomarker for cancer identification, and members of the PHLDA family have become considered potentially viable targets for cancer treatments. The PHLDA gene family consists of PHLDA1, PHLDA2, and PHLDA3. The predictive significance of PHLDA genes in cancer remains unclear. To determine the role of pleckstrin as a prognostic biomarker in human cancers, we conducted a systematic multiomics investigation. Through various survival analyses, pleckstrin expression was evaluated, and their predictive significance in human tumors was discovered using a variety of online platforms. By analyzing the protein-protein interactions, we also chose a collection of well-known functional protein partners for pleckstrin. Investigations were also carried out on the relationship between pleckstrins and other cancers regarding mutations and copy number alterations. The cumulative impact of pleckstrin and their associated genes on various cancers, Gene Ontology (GO), and pathway analyses were used for their evaluation. Thus, the expression profiles of PHLDA family members and their prognosis in various cancers may be revealed by this study. During this multiomics analysis, we found that among the PHLDA family, PHLDA1 may be a therapeutic target for several cancers, including kidney, colon, and brain cancer, while PHLDA2 can be a therapeutic target for cancers of the colon, esophagus, and pancreas. Additionally, PHLDA3 may be a useful therapeutic target for ovarian, renal, and gastric cancer.

摘要

PHLDA(类普列克底物同源结构域家族)基因家族是一种广为人知的癌症识别潜在生物标志物,PHLDA家族成员已被视为癌症治疗的潜在可行靶点。PHLDA基因家族由PHLDA1、PHLDA2和PHLDA3组成。PHLDA基因在癌症中的预测意义仍不明确。为了确定普列克底物同源蛋白作为人类癌症预后生物标志物的作用,我们进行了系统的多组学研究。通过各种生存分析评估了普列克底物同源蛋白的表达,并使用各种在线平台发现了它们在人类肿瘤中的预测意义。通过分析蛋白质-蛋白质相互作用,我们还为普列克底物同源蛋白选择了一组知名的功能性蛋白质伴侣。还对普列克底物同源蛋白与其他癌症在突变和拷贝数改变方面的关系进行了研究。利用普列克底物同源蛋白及其相关基因对各种癌症的累积影响、基因本体论(GO)和通路分析对它们进行评估。因此,本研究可能揭示PHLDA家族成员在各种癌症中的表达谱及其预后情况。在这项多组学分析中,我们发现,在PHLDA家族中,PHLDA1可能是包括肾癌、结肠癌和脑癌在内的几种癌症的治疗靶点,而PHLDA2可能是结肠癌、食管癌和胰腺癌的治疗靶点。此外,PHLDA3可能是卵巢癌、肾癌和胃癌的有用治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f33/11201736/085c8db19711/cimb-46-00328-g001a.jpg

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