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北非人源诺卡氏菌属物种概述:作为生物活性化合物的有前途的来源及三个测序基因组的计算机基因组挖掘分析

An Overview on Nocardiopsis Species Originating From North African Biotopes as a Promising Source of Bioactive Compounds and In Silico Genome Mining Analysis of Three Sequenced Genomes.

机构信息

Laboratoire de Microbiologie Appliquée (LMA), Faculté des Sciences de la Nature et de la Vie, Université de Bejaia, Bejaia, Algeria.

CNRS, Laboratoire de Biodiversité et Biotechnologies Microbiennes, LBBM, Sorbonne Université, Paris, France.

出版信息

J Basic Microbiol. 2024 Sep;64(9):e2400046. doi: 10.1002/jobm.202400046. Epub 2024 Jun 27.

Abstract

Actinobacteria are renowned for their prolific production of diverse bioactive secondary metabolites. In recent years, there has been an increasing focus on exploring "rare" genera within this phylum for biodiscovery purposes, notably the Nocardiopsis genus, which will be the subject of the present study. Recognizing the absence of articles describing the research process of finding bioactive molecules from the genus Nocardiopsis in North African environments. We, therefore, present a historical overview of the discoveries of bioactive molecules of the genus Nocardiopsis originating from the region, highlighting their biological activities and associated reported molecules, providing a snapshot of the current state of the field, and offering insights into future opportunities and challenges for drug discovery. Additionally, we present a genome mining analysis of three genomes deposited in public databases that have been reported to be bioactive. A total of 36 biosynthetic gene clusters (BGCs) were identified, including those known to encode bioactive molecules. Notably, a substantial portion of the BGCs showed little to no similarity to those previously described, suggesting the possibility that the analyzed strains could be potential producers of new compounds. Further research on these genomes is essential to fully uncovering their biotechnological potential. Moving forward, we discuss the experimental designs adopted in the reported studies, as well as new avenues to guide the exploration of the Nocardiopsis genus in North Africa.

摘要

放线菌以其丰富多样的生物活性次生代谢产物的产生而闻名。近年来,人们越来越关注探索该门内的“稀有”属种进行生物发现,特别是诺卡氏菌属,这将是本研究的主题。鉴于目前还没有文章描述从北非环境中的诺卡氏菌属中寻找生物活性分子的研究过程,因此,我们对源自该地区的诺卡氏菌属生物活性分子的发现进行了历史回顾,强调了它们的生物活性和相关报道的分子,提供了该领域当前状况的快照,并为药物发现提供了未来的机会和挑战的见解。此外,我们对三个已报道具有生物活性的公共数据库中存储的基因组进行了基因组挖掘分析。共鉴定出 36 个生物合成基因簇(BGCs),包括已知编码生物活性分子的 BGCs。值得注意的是,大部分 BGCs 与以前描述的 BGCs 几乎没有相似之处,这表明分析的菌株可能是新化合物的潜在生产者。需要对这些基因组进行进一步研究,以充分挖掘它们的生物技术潜力。展望未来,我们讨论了报告研究中采用的实验设计,以及指导北非诺卡氏菌属探索的新途径。

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