Gallego-García Pilar, Estévez-Gómez Nuria, De Chiara Loretta, Alvariño Pilar, Juiz-González Pedro M, Torres-Beceiro Isabel, Poza Margarita, Vallejo Juan A, Rumbo-Feal Soraya, Conde-Pérez Kelly, Aja-Macaya Pablo, Ladra Susana, Moreno-Flores Antonio, Gude-González María J, Coira Amparo, Aguilera Antonio, Costa-Alcalde José J, Trastoy Rocío, Barbeito-Castiñeiras Gema, García-Souto Daniel, Tubio José M C, Trigo-Daporta Matilde, Camacho-Zamora Pablo, Costa Juan García, González-Domínguez María, Canoura-Fernández Luis, Glez-Peña Daniel, Pérez-Castro Sonia, Cabrera Jorge J, Daviña-Núñez Carlos, Godoy-Diz Montserrat, Treinta-Álvarez Ana Belén, Veiga Maria Isabel, Sousa João Carlos, Osório Nuno S, Comas Iñaki, González-Candelas Fernando, Hong Samuel L, Bollen Nena, Dellicour Simon, Baele Guy, Suchard Marc A, Lemey Philippe, Agulla Andrés, Bou Germán, Alonso-García Pilar, Pérez-Del-Molino María Luisa, García-Campello Marta, Paz-Vidal Isabel, Regueiro Benito, Posada David
CINBIO, Universidade de Vigo, Vigo, Spain.
Galicia Sur Health Research Institute (IIS Galicia Sur), SERGAS-UVIGO, Vigo, Spain.
J Med Virol. 2024 Jul;96(7):e29773. doi: 10.1002/jmv.29773.
The dynamics of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) transmission are influenced by a variety of factors, including social restrictions and the emergence of distinct variants. In this study, we delve into the origins and dissemination of the Alpha, Delta, and Omicron-BA.1 variants of concern in Galicia, northwest Spain. For this, we leveraged genomic data collected by the EPICOVIGAL Consortium and from the GISAID database, along with mobility information from other Spanish regions and foreign countries. Our analysis indicates that initial introductions during the Alpha phase were predominantly from other Spanish regions and France. However, as the pandemic progressed, introductions from Portugal and the United States became increasingly significant. The number of detected introductions varied from 96 and 101 for Alpha and Delta to 39 for Omicron-BA.1. Most of these introductions left a low number of descendants (<10), suggesting a limited impact on the evolution of the pandemic in Galicia. Notably, Galicia's major coastal cities emerged as critical hubs for viral transmission, highlighting their role in sustaining and spreading the virus. This research emphasizes the critical role of regional connectivity in the spread of SARS-CoV-2 and offers essential insights for enhancing public health strategies and surveillance measures.
严重急性呼吸综合征冠状病毒2(SARS-CoV-2)的传播动态受到多种因素影响,包括社会限制和不同变体的出现。在本研究中,我们深入探究西班牙西北部加利西亚地区值得关注的阿尔法、德尔塔和奥密克戎-BA.1变体的起源与传播情况。为此,我们利用了EPICOVIGAL联盟收集的基因组数据以及来自GISAID数据库的数据,同时结合了西班牙其他地区和外国的流动性信息。我们的分析表明,阿尔法阶段的最初引入主要来自西班牙其他地区和法国。然而,随着疫情的发展,来自葡萄牙和美国的引入变得越来越重要。检测到的引入数量从阿尔法和德尔塔的96次和101次到奥密克戎-BA.1的39次不等。这些引入中的大多数留下的后代数量较少(<10个),这表明对加利西亚地区疫情演变的影响有限。值得注意的是,加利西亚的主要沿海城市成为了病毒传播的关键枢纽,凸显了它们在病毒持续传播和扩散中的作用。本研究强调了区域连通性在SARS-CoV-2传播中的关键作用,并为加强公共卫生策略和监测措施提供了重要见解。