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鉴定和验证GIMAP家族基因作为肺腺癌中免疫相关的预后生物标志物

Identification and validation of GIMAP family genes as immune-related prognostic biomarkers in lung adenocarcinoma.

作者信息

Zhang Yanyan, Liu Shan, Liu Deyi, Zhao Zhuxiang, Song Haifeng, Peng Kunwei

机构信息

Department of Infectious Diseases, Guangzhou First People's Hospital, School of Medicine, South China University of Technology, Guangzhou, Guangdong, China.

Department of Cardiology, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Institute of Cardiovascular Disease, Guangzhou, Guangdong, China.

出版信息

Heliyon. 2024 Jun 15;10(12):e33111. doi: 10.1016/j.heliyon.2024.e33111. eCollection 2024 Jun 30.

Abstract

BACKGROUND

The GIMAP family genes play a key role in immune function. Increasing evidence suggests that GIMAP genes were implicated in the tumorigenesis of lung adenocarcinoma (LUAD). This study aimed to investigate the clinical significance of GIMAP family genes in LUAD.

METHODS

In this study, we explored the expression, mutation, prognostic value of GIMAP family genes and the correlation with immune microenvironment in LUAD. We further investigated the relationship between GIMAP family genes expression and immunotherapy response in GEO LUAD and melanoma cohorts.

RESULTS

Among the GIMAP family genes, the expression levels of GIMAP1, GIMAP2, GIMAP4, GIMAP5, GIMAP6, GIMAP7, and GIMAP8 were significantly lower in LUAD tumor tissues than normal tissues. Most GIMAP genes were closely related to age, tumor grade and T stage, but not significantly related to sex, N stage and M stage. In the overall population, patients with high expression of GIMAP family genes had a significant longer overall survival (OS). GO and KEGG enrichment analysis showed that GIMAP family genes were highly enriched in immune-related biological process. The expression of GIMAP family genes was positively correlated with immune cell infiltration and immune checkpoint molecules. Furthermore, high expression of GIMAP family genes were correlated with therapeutic response to immunotherapy in LUAD and melanoma patients.

CONCLUSION

In this study, we identified that GIMAP family genes were significantly associated with immune cell infiltration and immune checkpoint molecules. They potentially play a critical role in anti-tumor immunity and serve as immunotherapy biomarkers.

摘要

背景

GIMAP家族基因在免疫功能中起关键作用。越来越多的证据表明,GIMAP基因与肺腺癌(LUAD)的肿瘤发生有关。本研究旨在探讨GIMAP家族基因在LUAD中的临床意义。

方法

在本研究中,我们探究了GIMAP家族基因在LUAD中的表达、突变、预后价值以及与免疫微环境的相关性。我们进一步研究了GIMAP家族基因表达与GEO数据库中LUAD和黑色素瘤队列免疫治疗反应之间的关系。

结果

在GIMAP家族基因中,GIMAP1、GIMAP2、GIMAP4、GIMAP5、GIMAP6、GIMAP7和GIMAP8在LUAD肿瘤组织中的表达水平显著低于正常组织。大多数GIMAP基因与年龄、肿瘤分级和T分期密切相关,但与性别、N分期和M分期无显著相关性。在总体人群中,GIMAP家族基因高表达的患者总生存期(OS)显著更长。GO和KEGG富集分析表明,GIMAP家族基因在免疫相关生物学过程中高度富集。GIMAP家族基因的表达与免疫细胞浸润和免疫检查点分子呈正相关。此外,GIMAP家族基因的高表达与LUAD和黑色素瘤患者的免疫治疗反应相关。

结论

在本研究中,我们发现GIMAP家族基因与免疫细胞浸润和免疫检查点分子显著相关。它们可能在抗肿瘤免疫中起关键作用,并可作为免疫治疗生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2833/11211882/14fa2eeba6c5/gr1.jpg

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