Center for Applied Medical Research (CIMA), University of Navarra, Pamplona, Spain.
Institute of Health Research of Navarra (IdiSNA), Pamplona, Spain.
EMBO J. 2024 Aug;43(16):3494-3522. doi: 10.1038/s44318-024-00153-x. Epub 2024 Jul 1.
Cells have evolved a robust and highly regulated DNA damage response to preserve their genomic integrity. Although increasing evidence highlights the relevance of RNA regulation, our understanding of its impact on a fully efficient DNA damage response remains limited. Here, through a targeted CRISPR-knockout screen, we identify RNA-binding proteins and modifiers that participate in the p53 response. Among the top hits, we find the mA reader YTHDC1 as a master regulator of p53 expression. YTHDC1 binds to the transcription start sites of TP53 and other genes involved in the DNA damage response, promoting their transcriptional elongation. YTHDC1 deficiency also causes the retention of introns and therefore aberrant protein production of key DNA damage factors. While YTHDC1-mediated intron retention requires mA, TP53 transcriptional pause-release is promoted by YTHDC1 independently of mA. Depletion of YTHDC1 causes genomic instability and aberrant cancer cell proliferation mediated by genes regulated by YTHDC1. Our results uncover YTHDC1 as an orchestrator of the DNA damage response through distinct mechanisms of co-transcriptional mRNA regulation.
细胞已经进化出了强大而高度调控的 DNA 损伤反应来维持基因组的完整性。尽管越来越多的证据强调了 RNA 调控的相关性,但我们对其对完全有效的 DNA 损伤反应的影响的理解仍然有限。在这里,我们通过靶向 CRISPR 敲除筛选,鉴定了参与 p53 反应的 RNA 结合蛋白和修饰因子。在顶级命中中,我们发现 mA 阅读器 YTHDC1 是 p53 表达的主要调节因子。YTHDC1 结合到 TP53 和其他参与 DNA 损伤反应的基因的转录起始位点,促进它们的转录延伸。YTHDC1 的缺乏也会导致内含子的保留,从而导致关键 DNA 损伤因子的异常蛋白产生。虽然 YTHDC1 介导的内含子保留需要 mA,但 YTHDC1 独立于 mA 促进 TP53 转录暂停释放。YTHDC1 的耗竭会导致基因组不稳定,并通过 YTHDC1 调节的基因导致异常的癌细胞增殖。我们的结果揭示了 YTHDC1 通过不同的共转录 mRNA 调节机制作为 DNA 损伤反应的协调者。